Mangifera indica (mango): 123192266
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Entry
123192266 CDS
T07684
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03020
RNA polymerase
minc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123192266
09124 Replication and repair
03420 Nucleotide excision repair
123192266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123192266
03400 DNA repair and recombination proteins [BR:
minc03400
]
123192266
Enzymes [BR:
minc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123192266
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123192266
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123192266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
123192266
NCBI-ProteinID:
XP_044460684
LinkDB
All DBs
Position
12:complement(13550347..13557903)
Genome browser
AA seq
1193 aa
AA seq
DB search
MDVEEEFGYAHDTQEDNEGDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGHQSDIAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
NLTYSAPLYVDVKKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYNNSEKDLT
ELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFE
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGT
GDYCETKKAYYFGYIINRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
YSSTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRKLRRRV
DVNTEVGVVRDIRLRELRIYTDYGRCSRPLFIVEKQRLLIKKRDIQALQQRESPEDWHDL
IAKGFIEYIDTEEEETTMISMTINDLVQARIHPEEAYSATYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAIACYSGYNQEDSVILNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVAQDEAQGQASRYTRHDHSI
SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGITPDIIMNPHAIPSRMTIGQLIECIMGKVAAYMGQEGDATPFTDVTVDNISKAL
HKCGYQMRGFETMYNGHTGRRLNDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
ECRGCKNKTDIVQIHIPYACKLLFQELMAMAIAPRMLTKEEPRTSKGVKRIGA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcgaagaagagttcggctacgcccatgacacacaggaggataatgaaggcgac
gaggagatcacgcaggaggatgcgtgggctgttatttcagcttatttcgaagagaagggt
ttggttcgccaacaactcgattccttcgatgaatttatccagaatactatgcaagaaatt
gttgatgaatcggcggacatcgagattcgccccgaatcacaacataaccctggacaccag
tctgatattgcagagaccatctataaaatcagctttggtcagatatatttgagtaagcct
atgatgactgaatccgatggggaaactgctaccttgtttcccaaagctgcgagattgagg
aatctgacttactctgccccgttgtatgtggatgtcaaaaagagagttataaaaaaaggg
catgactgtgaagaagtcactgaaacccaagatttcactaaagttttcatcgggaaggtc
cctataatgcttcggtcaagttattgcacgttatataataactcagagaaggatttgaca
gagcttggggagtgtccttttgatcaaggtggatattttattatcaacggtagtgaaaag
gttctaattgctcaagagaagatgagcaccaatcatgtctatgtgttcaaaaagaggcag
cctaacaagtatgcctatgtggcagaagttcggtctatggcagagtcacaaaatagaccg
cccagcactatgtttgtgcggatgctttctcggactagtgccaaagggggctcttctggg
cagtatattcgtgctacacttccatacattcgaactgaaattcctatcattatagtattc
cgggccttggggtttgttgctgacaaagatatattagagcacatatgctatgatttcgag
gatactcaaatgatggagttgctccggccttccctggaggaagcatttgtcattcaaaac
caacaggttgcgctggactacataggaaagagaggagctactgtaggtgttactaaggaa
aagaggattaagtatgccaaagagatccttcaaaaagaaatgcttcctcatgttggtaca
ggagattattgtgaaacaaagaaagcgtattattttggatatattattaatcggcttcta
ctttgtgcacttggccggagggctgaagatgatagggatcattatggcaacaagaggctg
gaccttgctggtcctttacttggaggcctgttcagaatgctatttagaaagttaacgaga
gatgtcagaggctatgtgcagaagtgtgtggataacggaaaggatgttaacctgcaattt
gcgatcaaagcaaaaaccatcaccagtggtctgaaatactctcttgcaactggcaactgg
ggtcaagcaaatgcagctggtacaagggctggagtatcacaggtgttaaatcgtctaacc
tattcctctacactgtctcatttgcgaagattaaattctccaatagggcgtgaaggaaaa
ttggccaaacccaggcagttgcacaattcacagtggggaatgatgtgtcccgctgaaaca
cctgaaggacaagcttgtggattggtaaagaacctcgctttaatggtttacataacagtt
ggatcagctgcctaccctattttggaatttttagaagaatggggaactgagaatttcgag
gaaatttctccagcagttattcctcaagctaccaaaatttttgtaaacggttgctgggtt
ggtatccatcgtgatccagatatgttggtgaaaacattgagaaaattaaggagacgggtt
gatgtcaatactgaagttggggttgttagagatattcgtttgagagagttacgtatatat
actgactatggacgttgcagtcgtccgctattcattgtggaaaaacaaaggcttctcata
aagaagagagacattcaggcactgcagcaaagggaatccccagaagattggcatgatctt
atagcaaagggatttattgaatatattgacacagaagaagaagagaccacaatgatttct
atgaccattaatgatcttgtacaagcaagaattcatccagaagaggcctattctgctaca
tatacacattgtgagatccatccatccttgattttgggtgtttgtgcttcaattatacca
tttcctgatcataatcagtccccccgtaatacatatcagtctgctatgggtaagcaagcc
atgggaatctatgtcacaaactaccaatttcgtatggatactttggcctatgttctttat
tatcctcaaaaaccactcgttactacacgagccatggagcatcttcactttaggcagctt
cctgcaggcatcaatgctattgttgcaatcgcttgttattctgggtacaaccaagaagac
tctgttattctgaatcaatcatcaattgatcgtgggttctttcgttcacttttctttcgt
tcatatagggatgaggagaaaaagatggggactcttgtgaaagaagatttcgggcgtcca
gatagatctaataccatgggcatgcggcatggttcttatgataaattggatgatgatggt
cttgcacctcctggcacaagagtctctggtgaggatgtgatcattggaaagacaacacct
gttgctcaggatgaagcccagggtcaggcatcacgttatacaagacatgatcatagcatt
agcttacgtcacagtgaaacagggattgtggatcaagttttactgactacaaatgcggac
gggttgaggtttgtgaaagtgagggtgagatctgttcgaataccccagattggagacaaa
tttagcagtagacatggtcagaaaggaacagtgggcatgacttacacacaggaagatatg
ccatggacagtggaaggcatcacccctgatatcattatgaatccacatgctattccttct
cgaatgactataggtcaacttatcgagtgtatcatggggaaggttgcagcttacatggga
caggagggtgatgccacacctttcacagatgtcaccgtggacaatattagcaaagctctt
cacaaatgtgggtatcaaatgcgtggttttgagacaatgtataatggacacactggcagg
cggctcaatgatatgatattcctaggccccacttattaccaaagattgaagcacatggtt
gatgataagatacattctcgtgggcggggacctgtacagatactcacaaggcagcctgct
gagggacggtctcgtgatggtgggcttaggtttggtgaaatggaacgtgattgtatgatt
gctcatggtgccgctcactttctcaaggagaggttgttcgatcaaagcgatgcatatagg
gtccatgtgtgtgagagatgtgggttgatagctattgcaaatctgaagaagaattctttc
gagtgcagaggctgcaagaacaaaactgacatcgttcagattcacattccttatgcatgt
aagttactcttccaagagcttatggccatggccattgcaccaagaatgctgacgaaggag
gagccaaggacatccaaaggcgtgaagaggataggtgcttaa
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integrated database retrieval system
