Mangifera indica (mango): 123193000
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Entry
123193000 CDS
T07684
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
minc04812
]
123193000
Cytoskeleton proteins [BR:
minc04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
123193000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Katanin_con80
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
NBCH_WD40
eIF2A
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_ACSF4
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IP5PC_F
WD_LRWD1
Beta-prop_WDR75_2nd
PROPPIN
Motif
Other DBs
NCBI-GeneID:
123193000
NCBI-ProteinID:
XP_044461678
LinkDB
All DBs
Position
12:complement(13288771..13298730)
Genome browser
AA seq
1069 aa
AA seq
DB search
MAKRGYKLQEFTAHSANVNCLSIGKKACRLLITGGDDHNVNLWAIGKPTSLMSLCGHTSP
VESLAFDSAEVLVLAGASAGVIKLWDLEEAKMVRTLAGHRSNCTAVQFHPFGEFFASGSM
DTNLRVWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF
KFHEGQIKSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPETTGVRSITFHPDGRT
LFCGLDNSLKVYSWEPVICHDAIDIGWSTLDDLCINDGKLLGCSFYQNFVGVWVADVSHI
EPYGAGRPEQNDCSEKKINPSDSYSSEKVGSGIRSTSSFCCRSPDYGTKEIKTIYVDSSG
GKPVASQKVESLDSPKIVLPVDSKEITDLQTEKQNPAIDLQAKSNAQTIIKSFVVPSIVP
CESPAGKDSSNSSRESIAFSKTKPGMLLRPAHIRRPSVTKVEAEKLSIPVESGSFSSGKD
EVDSAKDPKFQTQLVSLDGARKSFEKDSDVKSFTEKIEKVVALQGPLNQENCDESLNDSN
GIQSVKYVNGVAVVRGRTRSLVERFERREGFNTNDDQAINATLKRTVSRKEDQTTIITPS
KRLGCNEDQAAKVTSQMRIDRDTDQTTNSITLMRFQNNEGQATNTTSPVRSKNSEDQAAS
TTPPVRFMNIEDQMTNATLPVRTKNSEDQTTHTSSPGRFMNSEDRESDTTPPGRFLNGED
QTTNTTPPRRLKNSEDQVASITTPGRFKNSEDQVASTTPPGRFKNSEDQVACTTPSGRIK
NSVDQVTSITPPVRFKRSETQANNTTPVKFKKREDQLTKVIPSMRFKYNEDLPTNATTYM
RCKNSEEKVSNTAPPVRNRSDGEQATIISSHMMVEAEESPTILYQELQTSGRDTTSANDG
KVIEILMQTHDAFISTLRSRLTKLQVVRHFWEKNDIKGAIGAMRKLPDHSVQADTISILM
EKMEILNLDLFLCLLPVLVGLLDSKMERHANISLEMLLKLVAVFGPMICSTVSAPPAVGV
DLHLEQRRECCKQCFVHLQKIQKILPILVRRGGLLGKCASELNLVLQES
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtggatataagctgcaggaatttacggcacattcagcgaacgtaaattgt
ctgagtattgggaagaaagcatgtcggcttcttataactggtggggacgatcacaatgtc
aatctttgggcgattgggaaacccacctctttaatgagcctgtgtggtcatacaagtcca
gttgaatctttagcttttgattcagctgaagtgttggtgcttgccggagcttctgctggt
gtgataaagctgtgggatttggaagaagcaaagatggtgcgcactcttgccggacataga
tccaattgcactgctgttcaatttcatccatttggagagttctttgcttctgggtccatg
gacacaaatttaagggtttgggatatcaggaagaaaggatgcattcacacatacaagggc
catactcgaggaattagtactatcagattcactcctgatggtcgctgggttgtgtccggt
ggatttgataatgtagtaaaggtgtgggatcttactgctggaaaacttttgcatgacttt
aagtttcatgaagggcaaattaaatccttagacttccatccccttgagtttctcctggcc
acaggttcggcagacagaactgtgaaattctgggatttggaaacctttgaactgattgga
tctaccagacctgagactactggagttcgctcgattacctttcatcctgatggtcggacc
ctattttgtggtttggataatagtttgaaggtgtactcatgggagccagttatatgtcac
gatgctattgatataggatggtcaacacttgatgatctctgtattaatgacggaaagctt
ttgggatgttccttctatcaaaattttgttggagtttgggtagcagatgtgtcgcatatt
gagccatatggagctgggagacctgagcaaaatgactgttctgagaagaaaattaatccc
tccgattcctattcttcagagaaagtggggagtggcattagatccacttccagtttttgc
tgcaggtctcctgattatggcacaaaggagataaagaccatatatgttgactctagcggt
ggaaaacctgtggcttctcagaaagttgagtctttggattctcccaaaattgtactccct
gtggattccaaggaaatcactgatctgcaaacagagaagcagaatcctgcaatagatttg
caggcaaaatctaatgcgcagacaattattaaatcttttgttgttcctagtattgtacct
tgtgagagtcctgctgggaaagactcttccaattctagcagagaatctattgccttttct
aagacaaaacctggtatgctgctccggccagctcatatacggaggccatcagttaccaag
gttgaagctgaaaagctgtctatacctgttgaatctggaagttttagtagtgggaaggac
gaagtggacagtgcaaaggatccaaaattccaaactcagcttgtatcattagatggagct
agaaaatcctttgaaaaggactctgatgttaagagttttacagagaagattgaaaaagtt
gtagctctgcaagggcctttgaatcaagaaaattgtgatgaatcacttaatgacagcaat
ggaattcagtctgtcaaatatgtcaatggagttgcagttgtacggggaaggacacgctct
ctggtagagaggtttgaaagaagagagggatttaataccaatgatgatcaagcaattaat
gccactctaaagaggacagttagtagaaaagaagaccaaacaacaattatcacacctagc
aagagacttggttgcaatgaagatcaagcagctaaggttacctctcaaatgagaattgat
agagatacagatcaaacaactaactctatcactcttatgagatttcaaaacaatgaaggt
caagcaactaatactacctctcctgtgagatctaagaatagtgaagatcaagccgcgagt
actacccctccagtaagatttatgaacattgaggatcaaatgactaatgctacccttcca
gtgagaactaagaacagtgaggatcagacaactcacactagctctccagggagatttatg
aacagtgaagatcgagaatctgatactacccctcctgggagatttttgaacggtgaagat
caaacaactaataccacccctcctcggagattaaagaacagtgaagatcaagtggctagt
atcaccactcctgggagatttaagaacagtgaagatcaagtggctagtaccacccctcct
gggagatttaagaacagtgaagatcaagtggcttgtactaccccttctgggagaattaag
aacagtgtagatcaagtgactagcattacccctccagtgagattcaaaagaagtgaaact
caagcaaataatactactcctgtgaaatttaagaaaagggaagatcaactgaccaaggtt
atcccttctatgagatttaagtacaacgaagacctaccaactaatgcgactacttacatg
agatgtaagaacagtgaagagaaggtaagtaatactgctcctcctgtgagaaacaggagt
gatggagagcaagcaactattataagctctcacatgatggttgaagctgaagaaagcccc
accattctgtatcaagaactgcaaacttcaggaagggataccacctctgcaaatgatggg
aaagttattgaaattttgatgcaaactcatgatgcattcataagtactcttcggtcccgc
ttgacaaaattacaggtggttcgacatttttgggaaaaaaatgacattaaaggtgctatt
ggtgccatgaggaagctgccagatcattctgtgcaagctgatacaatcagtatcctgatg
gagaaaatggagattctcaacttggatttatttttgtgcttgcttcctgtgcttgttggt
ctactggacagcaagatggaaaggcatgcaaacatctcattggagatgcttctgaaactt
gtagcagtatttggcccaatgatatgctcaaccgtttcagcacctcctgctgtaggtgtt
gatcttcacctagagcaaaggcgagaatgctgcaagcagtgttttgtacatcttcagaag
atccagaaaattctcccaattcttgtaaggaggggtggcttgcttggaaaatgtgcttca
gaattgaatctagttcttcaagaatcatag
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integrated database retrieval system
