Mangifera indica (mango): 123193340
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Entry
123193340 CDS
T07684
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123193340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123193340
03041 Spliceosome [BR:
minc03041
]
123193340
03036 Chromosome and associated proteins [BR:
minc03036
]
123193340
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
123193340
Spliceosome [BR:
minc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123193340
Complex B
123193340
Complex C
U2 SnRNP specific factors
123193340
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
123193340
TFTC complex
123193340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
123193340
NCBI-ProteinID:
XP_044462177
LinkDB
All DBs
Position
12:complement(9106288..9111249)
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYSLTLQQSTGILCAINGNFSGTKTPEIVVARGKILELLRPESSGKIESVLSTEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSRNAFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKQLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAATHRQKLLFFFLLQ
TEYGDIFKVTLEHDNEHVRELKIKYFDTIPVTASMCVLKSGFLFTASEFGNHALYQFQAI
GDGPDVEASSATLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMKISNLFEEEAPQ
IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNANDEFDAYIVVSFNNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTVRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRTAMLCLSSRPWLGYIH
RGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIEKLGETFNETAIPLRYTP
RKFVLQPKRRLLVIIESDQGAFTAEEREAAKKECFETTGTAENGNGNVDQMENGDDENKD
DPLSDEQYGYPXAEADKWVSCIRVLDPRTGNTTCLLELQDSEAAFSVCTVNFHDKEYGTL
LAVGTAKGLQFWPKRSIVAGYIHIYRFLEDGKTLELLHKTQVEGVPLALCQFQGRLLAGI
GNVLRLYDLGKKRLLRKCENKLFPNSIVSVHTYRDRIYVGDIQESFHFCKYRRDENQLYI
FADDCVPRWVTASHHIDFDTVAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIVQFHVGDVVTSMQKASLVPGGGECIIYGTVMGSLGALLAFTSRDDVDFFSH
LEMHMRQEHPPLCGRDHMTFRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGE
ILKKLEEIRNRIV
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctgactctccaacaatccacaggcatactctgcgcaatcaatgga
aacttttcgggaaccaaaacccccgaaatcgtcgtagcacgtggcaaaatcctcgagctt
ctccgccccgaaagttccggcaaaatcgaaagtgttctttccactgaaatttttggtgcc
attcgctccctcgctcagttccgtctcaccggctctcagaaggactacatcgttgtcggg
tcagattcgggtcggatcgttattcttgagtacaatccttctcgaaatgccttcgataaa
atccaccaagaaactttcggtaaatcaggttgtcgccggatcgttccgggtcagtatttg
gctattgacccaaaaggtcgtgccgttatgattggtgcttgtgagaagcaaaaattagtt
tatgttttgaatagagatactgctgctagattaactatttcgtctccattagaagctcat
aaatctcacactattgtttattctatatgtggtgttgattgtggattcgacaacccaatc
tttgcggcaattgagttggattactctgaggctgaccaggattcaactggtcaagcagct
agcgaggcacaaaagcaattgacattttatgaattagatttagggcttaatcatgtctcg
cgaaaatggtcagaaccggttgataatggagcgaatatgttagttacagtgcctggagga
ggggatgggcctagtggggttttagtttgtgctgagaattttgtgatttataagaatcag
ggtcatccagatgttagggctgtaattcctaggcgagttgatttgccagctgagcgtgga
gttttgatagtttcagctgccacgcataggcagaaattattgtttttctttttgttgcag
acagagtatggagacatatttaaggttactttagaacatgataatgagcatgttcgtgaa
ttaaagatcaagtattttgatactattcctgtgaccgcatccatgtgtgtgttgaaatcg
gggtttttgtttactgcttcagagtttggcaaccatgctttgtatcagtttcaggcaata
ggggatggccctgatgtggaagcctcctcagccacattgatggagactgaagaaggattt
caacctgtgttttttcagcctagagggctcaagaatcttgttaggattgaacaagttgag
agtttgatgccaattatggatatgaagatttcaaatttgttcgaggaggaagcacctcag
atttttactttatgtgggcgtggtcctcgttcgtcacttaggatattgaggccaggtctg
gctgttagtgagatggctgtgtcacagctccctggtgtccctagtgctgtttggactgtg
aaaaagaatgcaaatgatgagtttgatgcatacattgttgtttcttttaacaatgcaact
cttgtgctttcaattggtgaaactgttgaagaagttagtgatagtgggtttctggatact
accccctcacttgctgtttctttaattggtgatgattctctaatgcaagttcatcccagt
ggcattaggcatataagggaagatgggcgtattaatgagtggagaacacctggaaagagg
acgattgttaaggttggctccaatagacttcaagtggtcattgctctaagtggaggtgag
ctcatttactttgaggtggatatgactggacaactgatggaagtggagaagcatgaaatg
tctggagatgtggcttgtttggacattgccccagttccagaaggaaggcagagatcccga
tttcttgcagttggttcatatgacaacacagtccgtatcttatcattggatcctgatgac
tgcatgcagattcttagtgtccaaagtgtgtcatcacctcccgaatctctcctttttctc
gaagttcaggcatcagttggtggggaggatggtgctgatcacccagctagtcttttcctc
aacgcaggtttgcagaatggggttctgttcagaacagtggttgatatggtgactggtcag
ctttcggattcccgttccaggttcttggggctgagaccgccaaagctcttttctgttgtt
gtgggaggccgcactgcaatgctttgtttgtccagtcgaccctggcttggctatattcac
cgaggacgtttccttttgacacctctttcctatgagactcttgaatatgctgcttcgttt
tcatctgatcagtgtgtggaaggtgttgtttctgttgcagggaatgcgctgagggttttt
accattgagaaacttggagaaacttttaatgaaactgctattcccttaaggtataccccc
agaaagtttgttcttcaacctaagaggagattgctagtaattattgagagtgatcaagga
gcattcactgcagaagagcgagaagctgcaaagaaagaatgctttgagaccactggaacg
gcagaaaatggaaatggtaatgtggatcagatggaaaatggtgatgatgagaataaagat
gatcccctctctgatgagcagtatggttatcctnaggcagaggcagacaaatgggtttcc
tgcatcagagttcttgaccctcgcacaggcaacacaacttgtcttctggagcttcaggac
agtgaagctgccttcagtgtatgcactgtcaattttcatgataaggagtatggaactctt
ttagcagttggtacagccaaaggactgcagttttggcccaaaagaagcatagttgcagga
tacattcatatttatcggttcttggaagatgggaaaacccttgaacttttgcacaagaca
caagtggaaggtgttccacttgctttatgccagtttcagggaagattacttgctggaata
ggtaatgttctcagattgtatgacttggggaagaagaggttgcttagaaaatgtgagaat
aagctgttccctaactctatagtttctgtacatacctatcgtgatcgaatctatgttggt
gatattcaagagtcgttccatttctgcaagtatagacgggatgaaaatcaactttatata
tttgctgatgattgtgttccaagatgggttacagcatcacaccacatagattttgacact
gtggctggtgcggacaagtttgggaatgtctattttgtgcgactgccgcaggatgtttca
gatgagatagaagaggatccaactggtgggaagataaaatgggaacagggtaaactgaat
ggagctcccaacaaagtagaggagatagtacagttccatgtgggtgatgtagtcacatcc
atgcagaaggcatctctcgttccaggtggtggggagtgcatcatttatgggactgttatg
ggtagcttaggagcattgcttgcattcacttctcgagatgatgttgacttcttttctcac
ctggagatgcatatgaggcaagaacacccaccattgtgtggacgagatcacatgactttt
agatctgcatattttcctgtgaaggatgtaattgatggagatctatgtgaacagttccct
acgctgccactggatttgcaaagaaaaattgctgatgaattggataggactcccggggag
atccttaagaaacttgaagaaattagaaacaggatcgtttaa
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