Mangifera indica (mango): 123193472
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Entry
123193472 CDS
T07684
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123193472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123193472
03012 Translation factors [BR:
minc03012
]
123193472
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123193472
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123193472
Translation factors [BR:
minc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123193472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
AAA_16
AAA_19
AAA_23
PhoH
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
123193472
NCBI-ProteinID:
XP_044462420
LinkDB
All DBs
Position
12:6279197..6290171
Genome browser
AA seq
1150 aa
AA seq
DB search
MHNYRLRALLLGSIRSHSNPNNRHLLHHSPSIRSNNPLFNFFVLLPLSAPKQRRGFCGYA
AEQFSDDEYECDYETHKASSTVANIDEWKWKLSVLLRSETDQEIVSRDKRDRRDYEQISN
LAKRMGLYSQIYGKVVVASKVPLANYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRT
QLSSGNVTESSDELKSVDQVEDVNLDENPDSFLDGSVMEKVLLRRSLQMRNMQRAWQESP
EGRKMMDFRKSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYVLESELESGRGA
FCSIICTQPRRISAMAVADRVSTERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRR
LLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSNYF
GEAPTIHIPGFTYPVQAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLVPRKRKNQ
ITALVEDALQKSSFENYSSRARDSLACWTPDCIGFNLIEAVLCHICRKERSGAVLVFMTG
WEDISCLRDQLKAHPLVGDPNRVLLLTCHGSMATSEQKLIFERPPPNIRKIILATNMAEA
SITINDVVFVVDCGKAKETTYDALNNTPCLLPSWVSQASARQRRGRAGRVQPGECYHLYP
RCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSAALQPPEPLAVQNAIDFLKM
IGALDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQE
KKDLAGIAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLQ
KQFTFILKDAGLLDEDTGTKNKLSHNQSMVRAVICSGLFPGISSVVHRETSMSFKTMDDG
QVFLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGISDSILILFGGALNSGAQAGH
LKMLDGYIDFFMDPSLAECYLKLKEELDKLLQKKLEDCSIDIHKEGKYLMLAVQELVTGD
QCEGRFVFGRASKKPKESADNSKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFR
ALVEFKGMQFVGKPKKNKQLAERDAAVEALAWLTHTSTDNQDQDDDTPPDVTDNMLKLLG
KRRRSKGHPR
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcacaactacaggctcagagctttactcttgggctctatacgctcgcactccaatccc
aacaatcgtcacttacttcaccactctccttctattcgcagcaacaaccccctgtttaac
ttttttgttctgctcccactctctgctccaaaacaacgccgtggcttttgcggctatgct
gccgagcagttctccgacgacgagtacgagtgtgactatgaaactcataaggcatcatca
acggtggccaacattgacgagtggaaatggaaactcagtgtgctgttacgtagtgaaact
gaccaagagattgtctccagagataaaagagatagaagagattatgagcagatttcaaat
ctcgctaaaaggatggggctctacagtcaaatttatggaaaagtagtagttgcgagcaag
gttcctcttgctaattaccggccagatttggatgataagcggccacaaagggaggttgtg
atcccactaagcttgcagaggagagtcgagggtctactgcaggaacaccttgatagaact
cagttaagttccggaaatgttactgagagttcagatgaattgaagtctgttgatcaggtt
gaagatgtgaatctggatgaaaatccggattctttcctcgatgggtctgtcatggagaag
gttcttctgaggaggagtttgcaaatgcgaaatatgcaaagagcttggcaggaatcacct
gaaggtaggaagatgatggattttcggaaatctctacccgcattcaaggaaaaggaaaga
ttgctccaagcaatagcccggaatcaggtaatagtaatatccggtgagacaggatgtggt
aagaccactcaacttcctcaatatgtattagagtcagaattagaatctggtcgtggagca
ttctgtagcataatatgcacacaacctcgaagaatatctgctatggctgttgcagataga
gtctccacagagagaggggagcctcttggtgaaacagttggcttcaaagttcgattagag
ggcatgaaaggaaaaaatacccatctccttttttgcaccagtggtattttacttcgaagg
ctgctaagtgatcgcaacttgaatggtgtcacccatgtctttgttgatgaaatacatgag
cgaggcatgaatgaagattttctcttaattgtgttgaaggatcttctttcacgtcgtagg
gatttgagattgattttaatgagtgcaactctgaatgctgagcttttctcaaattatttt
ggagaggcacccacaattcacatcccgggctttacatatccagtgcaagctcactttttg
gaagatgtattggaaatgactgggtacaagttgacttcttttaaccaaattgatgactat
ggacaagagaaaatgtggaaaacacagagacagctggtgccacggaaacggaaaaaccag
atcactgctcttgttgaggatgcactacagaaatctagttttgaaaattacagctccagg
gcacgtgattctcttgcatgctggacacctgattgtataggatttaatcttattgaagca
gttctgtgccatatatgccgaaaagaacgctcaggtgctgtgttggtatttatgactggt
tgggaggatatcagctgtttgagggatcaacttaaagctcatccgcttgtaggagatcct
aatcgagttctgcttctaacttgccatggttcaatggctacatctgaacaaaaactgata
tttgagagaccaccaccaaatatacgtaaaattattttggcaacaaatatggctgaggct
agcattacaattaatgatgtagtctttgtggttgattgtggaaaagcgaaggaaacaact
tatgatgcactgaataacacaccttgtctgctaccttcttgggtatcacaagcttctgct
cgacaaagaaggggcagggccggtcgtgtgcaacctggagaatgttatcacctatacccc
agatgtgtttatgaagcttttgctgaatatcaacttcctgaacttttgagaactcccttg
aactctctctgcttgcaaataaagagtctgcaagttggaagtattgcagaattcttatca
gcagctttgcagccaccggaaccattggctgtccaaaatgctattgactttttgaagatg
attggggccttggatgagaaggagaatctgacaaatcttggaaagtttttgtcaatgctt
cctgtagatcccaagctagggaaaatgctagtcatgggtgctatatttcgatgctttgat
cctgtattaaccattgtatcagggctcagcgtcagggatcctttccttttgcctcaagaa
aaaaaggacttagctggaatagctaagtctagattctctgccaaagactacagtgatcac
atggctcttgtccgtgcatatgaagggtggaaagatgctgaaagagaaggatctgcgtat
gagtattgttggaggaatttcctgtctgcacaaactcttcaggccattcattctctacag
aagcagtttaccttcattttaaaagatgctggtttactcgatgaagatacaggtactaaa
aacaaattaagtcacaaccagtccatggtccgtgctgtcatatgttctggtctctttcct
ggcatatcatctgttgtgcacagagagacatccatgtctttcaaaacaatggatgacggt
caagtttttctatatgcgaattctgtaaatgcacgctatcagacaattccttacccttgg
ctggtatttggtgaaaaagtgaaagtcaatacagttttcatccgtgattctactggaata
tctgattcaatactaatcctttttggcggtgctctaaacagtggggcacaggcgggccat
ttgaaaatgctggatggttatattgatttcttcatggatcctagtttggctgagtgctat
ttgaagcttaaggaagaacttgacaagcttcttcaaaaaaagcttgaagattgtagcatt
gacattcacaaggaaggcaagtaccttatgcttgctgttcaagagctggtaacaggagac
caatgtgagggaagatttgtgtttggccgtgcaagcaagaaaccgaaggagtctgctgac
aacagcaaatttacgaaagatggaacaaatcctaaaagcttactacagactcttttgatg
agagcaggccattcccctcctaaatacaaaacaaaacaccttaagacaaatgagttcagg
gcgctggtagagttcaaaggaatgcaatttgtgggaaaaccaaaaaaaaacaagcagctt
gcagagagggatgctgctgtagaggctttggcctggttgactcacacctctaccgacaat
caagaccaggatgatgataccccaccggatgtcaccgataatatgcttaaacttctcggg
aaacgtcgaagatcaaaaggccaccctcgatga
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integrated database retrieval system
