Mangifera indica (mango): 123193688
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Entry
123193688 CDS
T07684
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123193688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123193688
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123193688
mRNA degradation factors
5'-3' decay
Decapping complex
123193688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_EML_2
EIF3I
Motif
Other DBs
NCBI-GeneID:
123193688
NCBI-ProteinID:
XP_044462694
LinkDB
All DBs
Position
12:complement(15901718..15910296)
Genome browser
AA seq
1404 aa
AA seq
DB search
MASNPQGVASGGAGGGGGGGGFDMNKLLKPTSTPMNLIPNSTNLTTSPSFPTPSSPASYL
TPSSSYPPPTGPYPPYHYYPYPPPPPPHQHFALQPNINNNNRPHQTQISYPPQPLPQQPN
PNSSASTPLPLPPSPTTTSTNNLLMAFFGNQNQTHNLSPALSDSSTVAVPSAPPVRLRSS
KLPKGRHLIGSHLTYDIDVRLDGEVQPQLEVTPITKYASDPGLVLGRQIAVNRNYICYGL
KQGNIRILNIITALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRFFIWNITEGPDEEE
KPQILGKIVVAVQILADGESLHPRVCWHPHKQEILMVAIGNRILRIDSNRVGKGERFSGE
EPLKCPIDELINGVHFVGKHDGEVSELSMCQWLTTRLASASIDGTVKIWDDRKGTPLAVL
RPYDGQPVNSVTFLIGPYPQHIVLITGGPLNREVKIWASAEEEGWLLPSDVESWRCIQTL
DLKSSAESRLEDAFFNQVVALNRAGLFLLANAKKNAIYAVHIDYGTNPASTRMDYIAEFT
VTMPILSLTGTSDGSTDAEHIVQVYCVQTQAIQQYALDLSQCLPPPFENAELEKTDPSAA
RDATNSNGSAILESSHGNKSADLPMATTTLVPPILSSGSDSVPIASRSESFPSSEVTGLP
EKASSAETKPSALPSHSNAENIHTASPPPPLSPRLSCKSSGLRSPSNSYEPCPPPNELGG
DQSVTDYSVEHRANAGKEKVADVPSSGDNMWKGDRNVAQNDISMGPDPPVVFKHPTHLVT
PSEILSTVVSSSENSKFSQRMNVRESKVQDVVNNDTEGVEVEVKVVGETGNGQNNEYNSP
RESHISVNEKKEKSFYSQASDLSIQMARDCCVGTYNVDGIRQVNDVSVTEALDRPSNSRE
VEEQDVPKDAPAKVGTSEPPMVIPQSPVPATKGKKQKGKNTQISGASSASPSPYNSTDSS
NEPACNSVGPSSDATLCQLSAMQNMLDQLINMQKEMQKQMNTVVSGPVTKEGKRLESSLG
RSIEKIVKANTDALWARFQEENAKHEKLERDRMQQITNLITNSINKDLPAVFEKTLKKEI
AGVGPAVTRTISPTLEKSITSAITETFQKGVGEKAVSQLEKSVSSKLETTVARQIQAQFQ
TSGKQALQDALRSSLESSIVPAFEMSCKAMFEQIDSTFQKGLVKHTTTVQQQFESAHSPL
AIALRDAINSATSVTQTLSGELADGQRKLLALAAAGANSKAVNPLVTQSSNGPLAGLHEI
VEAPLDPTKELSRLIAERKYEEAFTGALHRSDVSIVSWLCSQVDLPGILSTVPLPLSQGV
LLALLQQLACDISKETPRKLAWMTDVAVAINPADPMIAMHVRPIFEQVYQILGHQRNLPT
TSASEANSIRLLMHVINSVLMSYK
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaatccgcaaggcgttgctagcggtggtgccggtggcggtggcggtggcggt
ggttttgacatgaacaaacttttgaaacccacgtccactcctatgaatttgattccaaac
tcaacaaatctaaccacttcaccttcatttccaactccttcttcccccgcttcctattta
acaccttcttcttcttatccccctccaactggtccctatcctccttatcactattacccg
tatccccctccccctcctccacatcagcactttgctcttcaaccaaatattaacaacaat
aatagaccccatcaaactcaaatctcttatcccccccaacctcttccccaacaacctaac
cctaattcttctgcttcaactcctcttcctcttccgccttctcccactactacttctact
aacaatcttctcatggccttcttcggcaatcagaatcagactcacaacttgtcacctgct
ctctccgattcatcaaccgttgctgttccttctgcgccgcctgttagattgcgtagcagt
aagcttcccaaagggaggcatttgattggcagtcatctgacttatgacattgatgttaga
ttagatggtgaagttcagcctcagcttgaagtaactcctattactaagtatgcctccgat
cctggtcttgtacttggtcgtcagattgctgttaataggaattacatttgttatggtctc
aagcaaggtaatattaggatacttaatattattactgctttgagatctttgcttcgtggt
cacactcagagagtaacagatatggctttcttcgctgaagatgttcatcttttggctagt
gcaagtgttgacggacgctttttcatatggaacattactgaaggcccggatgaggaagaa
aagcctcaaattttgggtaaaattgtagttgccgttcagatactggcagatggggaatca
ctccatccgcgagtttgttggcatcctcacaaacaagaaattttgatggttgcaattgga
aatcgaatcctgagaattgatagcaatagagttggaaaaggagaacggttttctggtgag
gaacctcttaagtgtcctattgatgagttgattaatggggttcattttgttggtaaacat
gatggtgaagtttcggagctgtcaatgtgccaatggctgaccacccgcttagcttcagca
tcaatcgacggcacagtaaagatttgggatgaccgtaagggaacaccccttgccgtgttg
agaccatatgatggtcaacctgttaattctgtgacattcctgattggtccttatccacag
cacattgtgctgatcactgggggtcctctgaaccgggaagtgaagatttgggcctctgca
gaggaggagggctggttgctgcccagtgatgttgaatcatggaggtgtattcagactttg
gacttaaagagttctgctgaatccaggcttgaggatgcattctttaatcaagttgtagca
ctgaaccgtgcaggcttgtttttactggcaaatgccaagaagaatgctatttatgcagta
cacatagactatgggaccaatccagcttcaacccgcatggattacatagctgaatttact
gttacaatgcctattttgagtcttactggaactagtgatggatctactgatgcagaacat
attgttcaggtttactgtgtccaaacacaggctattcagcagtatgctttagacctgtcc
cagtgcctgccaccaccttttgagaatgcagagttggagaaaacagaccctagtgctgct
cgtgatgccactaattccaatggttctgctattctggaatcatctcatggaaataaatct
gctgacttgcctatggctacgacgactttggtaccacctattctttcaagcggctctgat
agtgtacctatagctagccgctctgaaagttttccttcttcagaagttactggtttgcct
gaaaaggcttcaagtgcagagacaaagccaagtgctttaccatctcatagtaatgctgaa
aatatacacactgcatctcctccgcctcctttgagtccaaggctatcttgtaaatcatct
ggtttaagaagtccatcaaatagctatgagccttgccccccaccaaatgagcttggtggt
gaccagtctgttactgattattcagttgaacatagagcaaatgctggcaaagaaaaagtg
gctgatgtgccatcatcaggagacaatatgtggaagggtgatagaaatgttgcacaaaat
gatatttctatgggcccagatcctcctgttgtttttaagcacccaacccatctggtgact
ccatcagagattttatcaaccgttgtctcttcctctgaaaattcaaagtttagtcagcgc
atgaatgtgagagagtcaaaggttcaagatgttgtcaacaatgataccgagggtgttgag
gtggaagttaaagttgttggtgagacaggaaatggtcaaaataatgagtataactctcct
agggaatcacatatttctgttaatgagaagaaagagaaatccttctattcccaggcctca
gatcttagcattcagatggctagagattgttgtgtgggaacatataatgtggacggaatt
cgccaggttaatgatgtcagtgttactgaagcactagatagaccttctaatagcagagag
gttgaagaacaagatgtgccaaaagatgcacctgcaaaggttggtacatctgaacctccc
atggtgattccacaatccccggtcccagctaccaaagggaaaaaacagaagggaaagaat
actcaaatatctggtgcatcttctgcttcccctagcccttacaactccacagattcttct
aatgagccagcatgtaattctgttggtccgtccagtgatgctactttgtgccagctatca
gctatgcaaaatatgcttgatcagttgataaatatgcaaaaagagatgcagaagcagatg
aacactgtagtttctggcccggttaccaaagaaggtaaaagactggaatcgtccttgggc
cggagcattgaaaaaattgttaaggctaacacagatgctttgtgggctcgtttccaagaa
gagaatgctaaacatgagaagttagagcgagaccgtatgcaacaaataacaaatttgata
accaattctataaacaaggacttgccagccgtgtttgagaaaacattaaagaaagaaata
gctggggttgggccagctgttactcgcacaatctccccaactcttgagaaaagcataacg
tcagctatcacagagacattccagaagggagtgggtgaaaaggcagttagtcaacttgag
aaatcagttagttcaaaactggaaactactgtggccaggcaaattcaagcacagtttcag
acttctggcaagcaagctcttcaggatgcattacgatctagtttggaatcttcaattgtt
cctgcatttgagatgtcatgcaaagctatgttcgagcaaattgattccacattccagaaa
gggcttgtcaaacatacgacaactgttcaacagcagtttgaaagtgcacattctcccctt
gccattgcattgagggatgcaattaattcagcaacatcagttactcagactttaagtgga
gaattggcggatgggcagcggaagctcttagctcttgcagctgcaggtgccaactccaaa
gcagtgaatccattggtaactcagtcaagtaatggaccactggctggtcttcatgagatt
gttgaggcacctttggatccaacaaaagaactatctaggctgatagctgagcgcaaatat
gaggaggcattcacaggagccttgcacagaagtgatgtatcaattgtttcttggttgtgc
tctcaggttgatttaccagggattttgtcaaccgtaccgctccctctcagccaaggagtt
ctactggcacttcttcagcaattggcttgtgatatcagcaaagaaacaccaagaaaattg
gcatggatgacagatgtagcagttgccataaacccagcagatccaatgattgcaatgcat
gtgcgacctatctttgagcaggtctatcagatactagggcatcaacgaaacctacccact
acctctgcctcagaagcaaacagcatccgtcttcttatgcatgttataaattccgttttg
atgagctataaatga
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