Mangifera indica (mango): 123193859
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Entry
123193859 CDS
T07684
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123193859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123193859
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123193859
mRNA degradation factors
5'-3' decay
Lsm complex
123193859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
123193859
NCBI-ProteinID:
XP_044462864
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Position
13:complement(10125503..10129997)
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AA seq
128 aa
AA seq
DB search
MSWASPEDISLSTSLATYLDKKILVLLRDNRKLLGLLRSFDQFANVVLEGACERIIVGDL
YCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTHVSTEEIKRAQKAEKDATVLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggctagcccagaagatatttccctatccacttcactcgccacctatcttgac
aaaaaaattcttgtcttgctgcgtgacaatcgaaagctcttgggtcttcttcgttccttt
gatcaatttgcaaatgttgttcttgaaggtgcttgtgaacggattattgttggagatctt
tattgtgacatccctttgggtttatatgtaatccgtggggagaatgttgttttaattgga
gagctggatttagaaaaagaggagcttcccccacatatgactcatgtatcaacagaagaa
ataaaaagggcgcagaaagcagaaaaggatgctactgtgttaaagggctccatgagaaaa
agaatggagttccttgattttgattga
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