Mangifera indica (mango): 123194801
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Entry
123194801 CDS
T07684
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-B-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123194801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123194801
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123194801
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_12
TPR_1
TPR_19
TPR_MalT
ARM_TT21_N
ARM_TT21
ARM_TT21_5th
HEAT_Nup120
DUF627
Motif
Other DBs
NCBI-GeneID:
123194801
NCBI-ProteinID:
XP_044464164
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Position
13:complement(8654964..8665206)
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AA seq
854 aa
AA seq
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MDSWDSTQSTNANKSPDDDGVLSVSATLAKEAALYFQSRKFDECIDLLNQLLEKKPDDLK
ILHNIAIAEYCRDGCTDAKKLLDSLNNVKKRSEELAHSSGEHVENSSNLGNKAILASKGS
DASGHQFSAANSGSFVYMDEFDASVAKLNIAVIWFHLHEYAKALSILEPLYQNIEPIEET
TALQICLLLLDIALACHDASRSADVLIYLEKIFGVGCVSQGDSGSMALQQSANLLAKYSA
VPAGSSVADGSNSDLAASVNASESPLTRTLSEETLEDDTVLALSTLEISGQNLVRPIGLS
CVNDLSRTLLDKSISTVDLKLKLQLYKVRFLLLTRNLKQAKREVKHAMNIARGRDSSMAL
FLKSQLEFARGNHRKAIKLLLASSSRTEMAISSMFNNNLGCIYYQFSKCHVSSLFFSKAL
SNSASLRKDKPPKLLTFSQDKSLLITYNCGVQYLACGKPILAARCFQKASLVFYKRPLLW
LRLAECCLMALEKGLTVAGCAPSDRSEVRVHVVGRGKWRHLLIEEGISNKGHVDSVEKHD
LLFGSDAQPKLSLSLARQCLTNALHLLNFPDSNYSKFGLPHNSFVEGNEFSESASSKYSN
HKSIPGIDSKIPVGLGQVTANGDAKEQKGGTTLEIIQNSVSCYEDICRREILMIKQALFA
NLAFVELELENPVKALFAARSLLELPDCSRIYIFLGHVYAAEALCLLSKPKEAAEHFLKY
LSEGNNVDLPFSQEDCEQWRGQKTVDCEELNGGSVSVKNSSPEDCQDIILPKPEEARGTL
YANIAALYAVQGELDRAHQFVTQALSLLPRNAEATMTAIYVDLMLGKSQEAIARLKQCSH
VSFLSSGLQLSQSC
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggattcttgggattcaacgcaatcaaccaacgccaataagtcccctgacgacgatggc
gttctttccgtctctgccactctagctaaagaagccgctctctactttcagtctcgcaag
ttcgatgagtgcatcgatttacttaatcagctcttggaaaagaaacctgacgatcttaag
attctacataacattgcaattgcggaatattgccgggatggttgtacagatgcaaagaag
ttgcttgattcacttaataatgtgaagaagagaagtgaagaacttgcacattcatctgga
gaacatgttgagaattctagcaatcttggaaacaaagctattttggcttcaaaaggcagc
gacgcatcaggtcatcaattttctgctgcaaatagtggcagtttcgtttacatggatgaa
tttgacgcttctgtggcaaaactaaacattgcggttatctggtttcatcttcatgaatat
gcaaaggcattatcaatactagaacctttatatcaaaatattgaaccgatagaagagaca
acagctcttcaaatttgcctcttgttgcttgatattgctcttgcatgccatgatgcatcg
agatctgctgatgttttaatttacttggaaaaaattttcggtgtcggttgtgtgagtcaa
ggtgactctggaagcatggcactgcaacagtccgctaatctacttgcaaaatattccgct
gttccagcaggttcatcagttgcagatggttctaattcagatttagctgctagtgtaaat
gcctctgaaagtcctttaacaagaactttatcagaggagacacttgaggatgatacagtg
ttggcattgtcaactctggagatcagtggtcagaatttagtgaggccgattggtctttca
tgtgtaaatgatctgtcaaggaccctacttgataaatctatctctactgttgatctgaag
ctcaagttgcaactatacaaggttcgctttcttcttctcactagaaacctgaagcaagca
aagcgcgaagtcaagcatgctatgaacattgcacgtgggagggattcatccatggctctt
ttcttgaagtcccaacttgaatttgctcgtgggaaccaccgcaaagctattaagttgtta
ttggcatcaagtagccggacagagatggctatttcaagcatgtttaacaacaatcttggt
tgcatttactaccaattcagcaagtgccatgtatcatcacttttcttttccaaggcacta
agtaattctgcatcccttcggaaggacaagcctcctaagctattaactttctcccaggat
aaatctctcctcataacatataactgtggtgtgcagtatctggcttgtggaaagccaata
ttagctgctcgctgtttccagaaggcaagcttagttttttacaaacggcctctcttgtgg
cttagacttgctgaatgctgcttaatggctttggaaaagggactaactgtggcaggttgt
gctccatctgacagatcagaagtgagagttcatgtagttggcagagggaaatggaggcat
cttctaattgaggaaggtatttctaacaaggggcatgtggattctgtagaaaaacatgac
ttactttttggcagtgatgcgcagccgaagctttctttatctcttgcacggcagtgtctc
actaatgccttgcacttattgaattttcctgactcaaattattcgaagtttggtttgccc
cataattcatttgtggagggaaatgaattcagtgaatcagcatcgtcaaagtattcaaac
cacaaaagcatacctggaattgattccaagataccagtaggcttaggtcaggttactgca
aatggggatgccaaagagcaaaaaggagggacaactctggagatcatacagaattctgtg
tcttgttatgaggatatttgtagaagagaaatcctaatgattaagcaagctctgtttgca
aacttggcatttgtagagttggaactggaaaatcctgtgaaggccctctttgctgcaagg
tctctcttggaactcccagattgttcgagaatttacatctttttgggtcatgtatatgca
gcagaggcactctgcttactgagcaagcctaaagaagctgcagagcatttcttgaaatat
ctgtctgaaggtaataatgttgatttgccattcagtcaagaagactgtgaacaatggcga
gggcagaaaactgttgattgtgaagagttaaatgggggatcggtgtctgttaagaattct
tccccagaggactgtcaagatattatcttaccaaagccagaagaggcacgtggaaccctt
tacgcaaatattgctgcattgtatgcagtgcaaggagaactggatcgagcccatcagttt
gtgacacaagcattgtccctgttacctagaaatgcagaagccaccatgactgcaatatac
gtggatctcatgcttggcaagtcgcaagaagctattgccaggctaaaacagtgtagtcac
gtgagtttcctctccagtggtttacaattgagtcagtcttgctga
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