Mangifera indica (mango): 123194874
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Entry
123194874 CDS
T07684
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
minc
Mangifera indica (mango)
Pathway
minc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123194874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123194874
03036 Chromosome and associated proteins [BR:
minc03036
]
123194874
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
123194874
Coactivators
SAGA/TFTC/STAGA complex
123194874
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
123194874
STAGA complex
123194874
TFTC complex
123194874
SAGA complex
123194874
SLIK complex
123194874
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
WD40_MABP1-WDR62_1st
DSE1_N
Beta-prop_WDR36-Utp21_1st
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_TEP1_C
Beta-prop_SCAP
PAC11
Beta-prop_EIPR1
Beta-prop_IFT140_1st
CFAP251_N
Beta-prop_WDR19_1st
ASA1
Beta-prop_NOL10_N
Beta-prop_WDR41
Ge1_WD40
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_SPT8
Tricorn_2nd
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
SHKBP1_KCTD3_C
Beta-prop_NWD2_C
Beta-prop_ACSF4
PALB2_WD40
Beta-prop_DCAF12
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
123194874
NCBI-ProteinID:
XP_044464293
LinkDB
All DBs
Position
13:14819843..14825396
Genome browser
AA seq
671 aa
AA seq
DB search
MDDSRLTDFVTTFLKKKGFNEAETAFRAELQRKNNNGANNNSIDVLNDPELSKFFRSFSE
SDDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKKHIQEARTFFNS
FREDHEMLHLRDLQKLEGVLTPSHLEEMEFAHSLRNSKVNIKICQYSYELLLQYLHKTQC
TKMLGIINERINFEVSPGRPSSISDDAEIVTLIGSNQDAANKINQKEVHWGLLEDSLENR
LEKSGGLLPDSEKAEGENKEGEVDENKKRSVEGGKQGTSMKKSKKDKTISATAKTSRPEA
NTVPAVPRVKSELALPIMPTEVEQSFLEDLRNRVQLSSVALPSVCLYTFINTHNSLNCAS
ISHDGSLVAAGFSDSSLKVWDMAKLGQQTGSSVLQGENDTTGKEDTLGANGSKRSYTLFQ
GHSGPVYSASFSPLGDYILSCSADATIRLWSTKLNANLVCYKGHNYPVWDVQFSPLGHYF
ASCSHDRTARIWSMDRIQPLRIAAGHLSDVDCVRWHANSNYIATGSSDKTVRLWDIVSGD
CVRIFIGHRSMILSLAMSPDGRYMASGDEDGAIMMWDLASGRCVTPLIGHTSCVWSLAFS
CEGTLLASGSADSTVKLWDVTTSTKVLRTEEKSGNPNRLRSLKTLPTKSTPVYTVQFSRR
NLLFAAGVFSK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcgcgattgacggacttcgtgacgacgttcctgaaaaagaaaggcttcaac
gaggccgaaactgcttttagagctgaacttcagcggaaaaacaacaacggcgccaacaat
aattccatcgacgtacttaacgaccccgaactctccaagtttttccgctccttctccgaa
tcagacgatggtcctgcaagataccaggatgaatatagcaaactgaggtcctggacttat
agctccctggatctgtacaagcatgagttgcttcatgtgctctatccagtgtttatccac
tgtttcatggatctggtggctaaaaagcatatccaagaggccagaacctttttcaatagc
tttcgtgaggaccacgaaatgctgcacttacgagaccttcagaagttggagggggttctt
actccctctcatctagaggagatggaatttgctcattcactaaggaatagcaaagtcaac
attaagatatgtcagtactcctacgagctcctactgcagtatctacacaagacacaatgc
accaaaatgcttgggattatcaatgaacgtataaactttgaagtttctccgggacggcct
agctcaatttccgatgatgctgagatagttacacttattggaagcaaccaggatgcagca
aataaaataaatcaaaaggaagtacattgggggttgcttgaagattctttagaaaaccgc
ttggagaaatcaggtggtttactaccagattctgaaaaagctgaaggagaaaacaaagag
ggggaggtagatgagaacaagaaaagatcagtagaaggtggaaagcaaggcacttcaatg
aaaaagtcgaagaaggacaaaactatcagtgcaactgcaaaaacatctcgtcctgaggct
aacactgtgccagcagtcccccgagtgaaatcggagcttgctttgcccataatgccaacc
gaggtggaacaatcttttcttgaagacttgagaaaccgtgtacagttgagcagtgttgca
ttgccatcagtctgcttatatacatttatcaacacacataacagtttaaattgcgcatca
atatcccatgatggatccttggttgctgctggattctcggactcatcattgaaggtttgg
gatatggcaaagcttgggcaacaaactggaagttctgttttgcagggtgaaaatgatact
acaggaaaggaagatactttgggggcaaatggtagcaaaagatcttatacattatttcag
ggtcattcagggccagtatattctgccagttttagtcctcttggggattatattctttcc
tgctcagcagatgctacaattcgattatggagcacaaaactaaatgcaaatcttgtttgc
tacaagggtcataactatcctgtttgggatgttcagttttccccattaggacattatttt
gctagctgttcccatgatcgaacagcaaggatttggtctatggatagaatacagccatta
cgaatagcggcagggcacctgtctgatgttgattgcgtccgatggcatgccaactccaac
tatattgcaactggttctagtgacaaaacagttcgattgtgggacattgtgagtggggac
tgtgtccggattttcattggtcatagaagtatgattctgtcattggcaatgtcacccgat
ggacgttatatggcatccggcgatgaagatggtgctattatgatgtgggatcttgcaagt
ggtcgatgtgtcacaccacttataggtcacacgtcatgtgtgtggtcacttgcattcagt
tgcgaaggtacgcttctagcttctggatctgctgatagcaccgtaaaattatgggatgtc
actacaagcacaaaggtgctgaggacagaagaaaaaagtggaaatcccaacagactgaga
tccttgaagactctgccaaccaagtcgacacccgtctataccgtgcagttttctcgacgg
aatctactgtttgctgctggtgtcttctcaaaataa
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