Mangifera indica (mango): 123194874
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Entry
123194874 CDS
T07684
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
minc
Mangifera indica (mango)
Pathway
minc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123194874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123194874
03036 Chromosome and associated proteins [BR:
minc03036
]
123194874
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
123194874
Coactivators
SAGA/TFTC/STAGA complex
123194874
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
123194874
STAGA complex
123194874
TFTC complex
123194874
SAGA complex
123194874
SLIK complex
123194874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
WD40_like
VPS8_N
PALB2_WD40
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
123194874
NCBI-ProteinID:
XP_044464293
LinkDB
All DBs
Position
13:14819843..14825396
Genome browser
AA seq
671 aa
AA seq
DB search
MDDSRLTDFVTTFLKKKGFNEAETAFRAELQRKNNNGANNNSIDVLNDPELSKFFRSFSE
SDDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKKHIQEARTFFNS
FREDHEMLHLRDLQKLEGVLTPSHLEEMEFAHSLRNSKVNIKICQYSYELLLQYLHKTQC
TKMLGIINERINFEVSPGRPSSISDDAEIVTLIGSNQDAANKINQKEVHWGLLEDSLENR
LEKSGGLLPDSEKAEGENKEGEVDENKKRSVEGGKQGTSMKKSKKDKTISATAKTSRPEA
NTVPAVPRVKSELALPIMPTEVEQSFLEDLRNRVQLSSVALPSVCLYTFINTHNSLNCAS
ISHDGSLVAAGFSDSSLKVWDMAKLGQQTGSSVLQGENDTTGKEDTLGANGSKRSYTLFQ
GHSGPVYSASFSPLGDYILSCSADATIRLWSTKLNANLVCYKGHNYPVWDVQFSPLGHYF
ASCSHDRTARIWSMDRIQPLRIAAGHLSDVDCVRWHANSNYIATGSSDKTVRLWDIVSGD
CVRIFIGHRSMILSLAMSPDGRYMASGDEDGAIMMWDLASGRCVTPLIGHTSCVWSLAFS
CEGTLLASGSADSTVKLWDVTTSTKVLRTEEKSGNPNRLRSLKTLPTKSTPVYTVQFSRR
NLLFAAGVFSK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcgcgattgacggacttcgtgacgacgttcctgaaaaagaaaggcttcaac
gaggccgaaactgcttttagagctgaacttcagcggaaaaacaacaacggcgccaacaat
aattccatcgacgtacttaacgaccccgaactctccaagtttttccgctccttctccgaa
tcagacgatggtcctgcaagataccaggatgaatatagcaaactgaggtcctggacttat
agctccctggatctgtacaagcatgagttgcttcatgtgctctatccagtgtttatccac
tgtttcatggatctggtggctaaaaagcatatccaagaggccagaacctttttcaatagc
tttcgtgaggaccacgaaatgctgcacttacgagaccttcagaagttggagggggttctt
actccctctcatctagaggagatggaatttgctcattcactaaggaatagcaaagtcaac
attaagatatgtcagtactcctacgagctcctactgcagtatctacacaagacacaatgc
accaaaatgcttgggattatcaatgaacgtataaactttgaagtttctccgggacggcct
agctcaatttccgatgatgctgagatagttacacttattggaagcaaccaggatgcagca
aataaaataaatcaaaaggaagtacattgggggttgcttgaagattctttagaaaaccgc
ttggagaaatcaggtggtttactaccagattctgaaaaagctgaaggagaaaacaaagag
ggggaggtagatgagaacaagaaaagatcagtagaaggtggaaagcaaggcacttcaatg
aaaaagtcgaagaaggacaaaactatcagtgcaactgcaaaaacatctcgtcctgaggct
aacactgtgccagcagtcccccgagtgaaatcggagcttgctttgcccataatgccaacc
gaggtggaacaatcttttcttgaagacttgagaaaccgtgtacagttgagcagtgttgca
ttgccatcagtctgcttatatacatttatcaacacacataacagtttaaattgcgcatca
atatcccatgatggatccttggttgctgctggattctcggactcatcattgaaggtttgg
gatatggcaaagcttgggcaacaaactggaagttctgttttgcagggtgaaaatgatact
acaggaaaggaagatactttgggggcaaatggtagcaaaagatcttatacattatttcag
ggtcattcagggccagtatattctgccagttttagtcctcttggggattatattctttcc
tgctcagcagatgctacaattcgattatggagcacaaaactaaatgcaaatcttgtttgc
tacaagggtcataactatcctgtttgggatgttcagttttccccattaggacattatttt
gctagctgttcccatgatcgaacagcaaggatttggtctatggatagaatacagccatta
cgaatagcggcagggcacctgtctgatgttgattgcgtccgatggcatgccaactccaac
tatattgcaactggttctagtgacaaaacagttcgattgtgggacattgtgagtggggac
tgtgtccggattttcattggtcatagaagtatgattctgtcattggcaatgtcacccgat
ggacgttatatggcatccggcgatgaagatggtgctattatgatgtgggatcttgcaagt
ggtcgatgtgtcacaccacttataggtcacacgtcatgtgtgtggtcacttgcattcagt
tgcgaaggtacgcttctagcttctggatctgctgatagcaccgtaaaattatgggatgtc
actacaagcacaaaggtgctgaggacagaagaaaaaagtggaaatcccaacagactgaga
tccttgaagactctgccaaccaagtcgacacccgtctataccgtgcagttttctcgacgg
aatctactgtttgctgctggtgtcttctcaaaataa
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