Mangifera indica (mango): 123196231
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Entry
123196231 CDS
T07684
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123196231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123196231
03012 Translation factors [BR:
minc03012
]
123196231
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123196231
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123196231
Translation factors [BR:
minc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123196231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
NACHT
ATPase
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
123196231
NCBI-ProteinID:
XP_044466101
LinkDB
All DBs
Position
14:6135..17144
Genome browser
AA seq
1186 aa
AA seq
DB search
MPCSSLLMSLRPTSSLFHLSPKTLLKSSLFSLLLSRNQCLSFRSFPQLRRYGAFTCSGAA
TRARRLNWKNVSWPYLEQQCSNYGRFAYLDVSSDESDREFGSKQQQMCGSTLENIEDWRW
KLTMLVRNNDEQEVVSRERKDRRDFEQLSSLATRMGLHSRQYAKVVVFSKVPLPNYRSDL
DNKRPQREVILPFGLLREVDGHLKAYEQLKYINREYFLDKSLSNSSSSANIGTDEKLYEQ
QEPLAKNSVVMERILRRRSLQLREKEQDWQESPEGQKMLEFRRNLPAHKEREALLNAIAQ
NQVVVVSGETGCGKTTQLPQYILESEIEAVRGAACNIICTQPRRISAIAVSERVAAERGE
KIGESVGYKVRLEGLKGRDTRLLFCTTGILLRRLLVDRNLKGVTHIIVDEIHERGMNEDF
LLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAHFLEQILERT
GYRLTSYNQIDDYGQEKSWKMQKQAQALKKRKSQIASAVEDALEAADFRDYSLCTQESLS
CWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPGRVLLL
ACHGSMASTEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNN
TPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQ
IKSLQLGSISEFLSRALQPPEPLSVKNAVEYLKIIGALDENESLTILGRNLSMLPVEPKL
GKMLILGAIFNCLDPIMTVVAGLSLRDPFLMPFDKKDLAESAKSQFSDHNYSDHLALVRA
YDGWKAAERQQSGYEYCWKNFLSTQTLKAIDSLRKQFFYLLKDTGLVEHNTENCNKWSHD
EHLVRAVICAGLFPGICSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEK
IKVNSVFLRDSTGVSDSVLLMFGGSISSGGLDGHLKMLGGYLEFFMKPAVVDMYMRLKRE
IDELIQKRLLNPEMDMQVHNELLMAVRLLVSEDQCEGRFIFGRQVLAPSKKAAKVTLPGL
VSKGGDDNSKSELQTLLSRAGHGAPTYKTNRLKNNQFRSTVMFNGLDFMGQPCSSKKRAE
KDAAAEALLWLKGESHSSVQDLDHVSMLLKKSKIKNKKRIPGAKWT
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgccttgctcatccttgctcatgtctctaagaccaacttcttccctcttccatctatcc
ccaaaaaccctattaaaatcctccctcttttcccttcttttatccaggaaccaatgcctt
tccttcaggtcttttcctcaattgagaaggtacggggcttttacctgctcgggggctgcc
actagagctcgtaggttgaattggaagaacgtttcgtggccgtatttggagcagcagtgc
tctaattatggccggttcgcctacctggacgtttccagcgatgaatctgatcgtgaattc
gggtcaaagcagcaacaaatgtgtggttcaacccttgaaaatattgaagattggaggtgg
aagttaaccatgcttgttcgcaacaacgatgagcaagaggttgtgtcaagggaaagaaag
gacagacgtgactttgagcaactttcatctttggctacaagaatgggattacatagtcgt
caatatgcaaaagtagtagtttttagtaaagtcccactgccaaattacagatctgatcta
gataataagcgtccacagagagaggttatcttaccatttggactgttgagagaagtagat
ggtcatctcaaagcttatgaacaactcaaatatataaatagggaatatttcttggataaa
tctttgtcaaattcaagtagtagtgcaaatattggtactgatgaaaaactctacgagcag
caggagccacttgcaaagaatagtgttgtcatggagagaattctgcggcggcgaagtttg
cagctgcgtgaaaaggagcaggattggcaggaatctcctgaaggtcaaaagatgcttgaa
tttcgtagaaatcttcctgcacataaggagagggaagcattattaaatgccattgcacag
aatcaggtggttgttgtctcgggtgaaactggctgtggtaaaaccacccagcttcctcag
tacattttagaatcagaaattgaagctgtgcgtggagcagcctgcaatatcatatgtact
cagcctagaagaatatctgccattgctgtttctgagagagttgctgcagaacgaggagag
aaaattggagaatctgttggttataaagttcgtctagagggacttaaagggagggacaca
cgccttctgttttgcacaactggaatactattgaggagattgcttgttgacagaaatttg
aaaggtgtaactcacattattgttgatgagattcatgaacgtggaatgaatgaagatttt
ctccttattgtcttgaaagagctccttcctcgtcgaccagaattgaggttaattctgatg
agtgcaacccttaatgctgagcttttttcttcttactttggcggtgctccaatgctacat
atcccgggctttacatatccagttcgagcacattttctggaacagattctggaaaggact
ggatatcggttgacctcttataatcaaattgatgattatggtcaagaaaagtcatggaaa
atgcaaaagcaagctcaagctctgaaaaagaggaagagtcagattgcttctgctgttgag
gatgcacttgaagcggctgacttcagagattatagtttatgcactcaggaatctttatcc
tgttggaatcctgactcaattggatttaacctcattgagcatgtactttgtcacattgta
aagaaggagagacctggcgctgttttggtttttatgactggttgggatgacataaactct
ttgaaggatcagctccaagctcatcctcttttgggggatccaggcagggttttgttgctt
gcatgccatggttccatggccagcactgaacagaggctaatatttgataagcccgaagat
ggagtgaggaaaatagttctagctactaacatggctgaaacaagtatcactattaatgat
gtagtttttgtggtcgattgtggaaaggcgaaagagacatcatatgatgcactaaataac
actccttgtttgcttccatcttggatttcaaaggcttctgcccggcaaagaaggggaaga
gctggtcgtgttcagcctggtgagtgttatcatctctatcccagatgtgtgtatgatgct
tttgctgattatcagttgccagaactgttgaggactccattgcagtcattgtgtctgcaa
atcaaaagtttgcagcttggaagtatatctgagttcctctctagagccttgcagccacct
gaacctttatcggtaaaaaatgctgttgaatatttaaagattattggggctttagatgag
aatgaaagtctgacaatactaggacgcaacttgtcaatgcttccagttgagcctaaactt
ggaaaaatgctgatattaggggctattttcaactgtcttgatcccataatgacggttgtt
gctggtcttagtctccgagatccattcttgatgccatttgacaagaaggatcttgcagag
tcagcaaaatctcaattttctgatcataactatagtgaccaccttgcacttgtacgagcc
tatgatggttggaaagctgctgaaagacagcaatctggttatgagtactgttggaaaaat
tttctctccacacaaacactgaaagccattgactctctccgtaagcagttcttttatttg
ctcaaggatactggtctggtagaacacaatacagagaactgcaataaatggagtcatgat
gagcaccttgttcgggcagtcatctgtgcgggtttattccctggaatatgctctgttgtg
aacaaagaaaagtctatagcactaaaaacaatggaggatggtcaggtgcttctatactcg
aattctgtgaatgctggagtacccaaaattccatacccatggctagttttcaatgaaaag
attaaagtgaattcagtttttctccgggattcaactggtgtatctgattctgtgcttctc
atgtttggagggagcatttccagtggtggactagatggacacctgaaaatgttgggagga
tacttagaatttttcatgaaacctgcggtagtggatatgtatatgagattaaaacgagag
atcgatgaactaattcagaagagacttctgaatcctgagatggacatgcaagtacacaat
gaactcctgatggcagtcagattgctggtgtcagaagatcaatgtgagggaagatttatc
tttggtcgtcaggtgctggcaccctcaaagaaggcagcaaaagtgacacttccaggtctg
gtctccaaaggaggagatgataattccaagagtgagctgcaaacattgctttccagggct
ggacatggagctccaacctacaagacaaataggctgaaaaacaaccagttccgttctact
gtgatgtttaatgggttggattttatggggcaaccctgcagcagtaagaaacgtgctgaa
aaggatgcagctgctgaggctctgctttggttgaaaggcgaaagccattcctctgtgcaa
gatcttgaccatgtttcgatgcttctaaagaagagcaaaataaaaaataaaaagagaatt
cctggtgctaaatggacttaa
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