Mangifera indica (mango): 123196715
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Entry
123196715 CDS
T07684
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
minc
Mangifera indica (mango)
Pathway
minc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123196715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
minc03400
]
123196715
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123196715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
DUF7006
DUF3856
Motif
Other DBs
NCBI-GeneID:
123196715
NCBI-ProteinID:
XP_044466742
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All DBs
Position
14:complement(1479254..1488501)
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AA seq
943 aa
AA seq
DB search
MDDNIIEDQNKLPELKLDAKQARGFLSFYRTLPSDPRAVRFFDRRDYYTAHGENATFVAK
TYYRTTTAMRQLGSGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWKLVKS
GTPGNLGSFEDVLFSNNEMLDTPVVVALCPNFRENGCTVGLGYIDLTKRVLGLAEFLDDS
HFTNVESSLVALGCKECLLPIESGKSSERRPLLDALSRCGVMLTERKKSEFKTRDLVQDL
GRLVKGSIEPVRDLISGFEFAPGSLGALLSYAELLADESNYGSYSIRRYNLDSYMRLDSA
AMRALNVMESKTDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLDVNEINVRLDLVQA
FVEDAALRQDLRQHLKGISDIERLMHNLGRRRAGLQHLVKLYQSSIRLPYIRSALQQYDG
QFSSLIKERYLDPLDVLTDDDHLNKFIGLVEASVDLDQLENGEYMISSSYDPALAALKDE
QESLDRQIHSLHTQTAFDLDLPLDKALKLDKGTQFGHVFRITKKEEPKIRKKLSTQFIVL
ETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVVQTAATFSEVFESLAGLLSEL
DVLLSFADLASSCPTPYTRPDISPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKS
WFQIITGPNMGGKSTFIRQIGVNVLMAQIGSFVPCDKASISVRDCIFARVGASDCQLRGV
STFMQEMLETASILKGATNKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIGAPTLFAT
HFHELTALTDENSNHELHKKQLVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHV
AEFANFPASVVALAREKASELEDFSPSEVISNDSKEEVGSKRKRVVDPSDMSKGVAWAHK
FLKKFADLPLEKMDFQQALQQVKKMKDDLAKDAIDCSWLQQFL
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaacattattgaagatcagaacaagcttcctgaactcaaattagatgcaaaa
caagctcggggatttctttcattttacagaaccctaccaagtgatcctagggctgttcgg
ttcttcgatcgtcgggactactacactgctcatggtgaaaatgcaacttttgttgcaaag
acatactaccgtactactactgctatgcggcaattgggcagtggatctgatgctctttca
agtgtaagtgttagtaagaacatgtttgaaacaattgctcgtgatcttctcctggaaaga
acagatcacactcttgagctctatgaaggtagtggctcaaattggaaactagtgaagagt
gggactccagggaatctaggaagttttgaagatgttctgttttccaacaatgagatgctg
gatacccctgttgttgttgcactgtgtccaaacttccgtgaaaatggatgcactgttggg
ttgggttatattgatttaactaagagagtacttggattggctgaatttcttgatgatagc
cactttacaaatgtggaatcatctttggttgctcttggttgcaaggagtgccttttgcct
atagagtctggaaagtctagtgagcgtaggcctctgcttgatgctttgtccagatgtggt
gtgatgttaactgagagaaagaaaagtgagtttaaaacaagggatttagtgcaggatctt
ggtagacttgttaaaggttccattgaacctgttcgagatttgatatctggttttgaattt
gctcctggttctttaggggcattactgtcttatgctgagttacttgcagatgagagtaat
tatggaagttattcaattcgaaggtacaacctggacagctacatgaggttggattctgct
gccatgagggcactaaatgtcatggaaagcaaaactgatgcaaacaagaatttcagtttg
tttggtctcctgaatagaacctgtactgctgggatgggaaaacgactacttcatatgtgg
ttaaagcagcctttgttagatgtgaatgaaataaatgtcaggctggacctggtacaagca
tttgttgaagatgctgcacttcgccaagatctgaggcagcatctgaaaggaatctctgat
atagaacgactgatgcataaccttgggaggagaagagctggtctgcagcatttagtaaaa
ctttatcaatcaagcatccgacttccgtacatcagaagtgccctgcaacagtatgatgga
cagttttcatcattgatcaaggaaaggtatttagatccactggatgttttaactgatgat
gatcatttgaataagttcattggtctggtagaagcttccgttgaccttgatcaacttgaa
aatggagagtacatgatctcatcaagttatgatcctgctttagcagcactaaaagatgag
caggaatctctggatcgccaaatacacagtttgcatacacaaacagcttttgaccttgat
ttgcctcttgataaggccttaaagttagataaagggacacagtttggacatgtcttcaga
attacgaagaaggaagaaccaaaaataaggaaaaagctcagcactcaatttattgtcctt
gaaacacggaaagatggagtgaaattcactaatacaaagcttaaaaaattaggggaccag
taccaaaaagttcttgaggaatacaagaattgtcaaaaagagcttgttaacagagttgtt
caaactgcagcaactttctctgaggtatttgagtctttggctggtttgctttctgaattg
gatgtcttgctcagttttgctgatttagcttctagttgtccaacaccatacacaagacca
gacatcagtccacctgatgtgggagatattatattagaagggagtagacacccttgtgta
gaagctcaagactgggtgaattttataccaaatgattgtaaacttatcagaggaaagagt
tggtttcagatcatcactggacctaacatgggtggaaagtccacatttattcggcagatt
ggtgtaaatgttttgatggcacaaattggttcgtttgttccttgtgacaaagctagcatt
tctgtacgtgattgcatttttgctcgtgttggtgctagtgactgccaattacgtggagtt
tctacctttatgcaagaaatgcttgaaactgcatcaatattgaagggggctaccaataag
tcattgataatcattgatgagttaggccgtgggacatcaacttatgatggatttggttta
gcatgggctatatgcgagcacctggttgaagtgattggagcacctactttgtttgcaacc
cacttccatgaattgactgcattaactgatgaaaattccaatcatgaactccataaaaag
caacttgtcggtgtggcgaactatcatgttagtgcacatattgactcatcaagtcgcaag
ttgactatgttgtacaaggttgaaccaggagcttgtgatcaaagtttcggtattcatgtt
gcagaatttgcaaattttcctgcaagtgtcgttgcccttgctagagaaaaagcttctgaa
ttggaagatttctcaccttctgaagtaatttcaaatgattcaaaagaagaggtgggatcc
aaaagaaagagagtggtcgatcccagtgacatgtctaaaggtgttgcctgggctcacaag
tttctaaagaaatttgctgatttgccattagagaaaatggactttcagcaggctctgcag
caagtaaaaaagatgaaagatgacttagcgaaggatgcgattgactgtagctggctccag
caattcctctag
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