Mangifera indica (mango): 123196755
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Entry
123196755 CDS
T07684
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123196755
09123 Folding, sorting and degradation
03018 RNA degradation
123196755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123196755
03041 Spliceosome [BR:
minc03041
]
123196755
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123196755
mRNA degradation factors
5'-3' decay
Lsm complex
123196755
Spliceosome [BR:
minc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123196755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
123196755
NCBI-ProteinID:
XP_044466800
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Position
14:complement(1011043..1013915)
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AA seq
98 aa
AA seq
DB search
MSNGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSNLDLSNLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatggcccgggacttgagtctcttgtagatcagacaatatcagtcataacaaat
gatggacgtaacatagtgggaattttgaaaggatttgaccaggccactaatataatcctt
gatgaatcccatgaacgtgtttactccacgaaggaaggtgttcagcaacttgtgttagga
ttgtacataataaggggtgacaacataagcattgttggggaacttgatgaagaattggat
tctaatcttgacttgtcaaatttgagggcacatcccctcaaacctgtcatccattaa
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