KEGG   Mangifera indica (mango): 123196755
Entry
123196755         CDS       T07684                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
minc  Mangifera indica (mango)
Pathway
minc03018  RNA degradation
minc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:minc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123196755
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123196755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:minc03019]
    123196755
   03041 Spliceosome [BR:minc03041]
    123196755
Messenger RNA biogenesis [BR:minc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123196755
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123196755
Spliceosome [BR:minc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123196755
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 123196755
NCBI-ProteinID: XP_044466800
LinkDB
Position
14:complement(1011043..1013915)
AA seq 98 aa
MSNGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSNLDLSNLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcaaatggcccgggacttgagtctcttgtagatcagacaatatcagtcataacaaat
gatggacgtaacatagtgggaattttgaaaggatttgaccaggccactaatataatcctt
gatgaatcccatgaacgtgtttactccacgaaggaaggtgttcagcaacttgtgttagga
ttgtacataataaggggtgacaacataagcattgttggggaacttgatgaagaattggat
tctaatcttgacttgtcaaatttgagggcacatcccctcaaacctgtcatccattaa

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