Mangifera indica (mango): 123197646
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Entry
123197646 CDS
T07684
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123197646
03036 Chromosome and associated proteins [BR:
minc03036
]
123197646
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123197646
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
123197646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HTH_44
Tex_central_region
HHH_3
HHH_9
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
123197646
NCBI-ProteinID:
XP_044467920
LinkDB
All DBs
Position
15:complement(9184627..9195774)
Genome browser
AA seq
1640 aa
AA seq
DB search
MGKHVVSDEEDEIEYEGEEEQEPVEGDAVEDRDDDEDEDDEEVQDEYEKDGFIVDDIDEE
EEEEEEERADSDDERQKKKKKRKKKEAEDVLDEDDYELLRDNNINYRPKESKKFRRLKKG
QGDADEDRFGISDEEFDGSGRGGRTAEEKLKRSLFGDDEGAPLEDIAEEEQIEEEEEDGD
IGEEDEMADFIVDEEEVDEHGAPVRRKKLKKKKSRQAPGVSSSALQEAHEIFGDVDELLE
RRKQGLDSSEWRERRLEDEFEPIILSEKYMTEKDDHIRMTDIPERMQISEESTGSPPTDE
ASIEEEASWIYNQLLGGTVPLFGHRGAGSPKEGQDLSITRRDIWRFLDLLHVQKLDIPFI
AMYRKEECLSLLKDPEEQEVDDDNKDDFERPPKLKWHKVLWAIQDLDRKWLLLQKRKSAL
ESYYKKRFEEESRRIYDETRLALNEQLFDSISKSLKAAESEREVDDVDSKFNLHFPPGEV
GVDEGQYKRPKRKSQYSICSKSGLWEVVSKFGYSSEQLGLQLSLEKMGYELEDARETPEE
MASNFTCAMFETPQAVLKGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTSPTPDGNLAI
DSFHQFAGVKWLREKPLRKFVDAQWLLIQKAEEEKLIQVTFKLPDDSLDKLISDCNEHYL
SDGVSKSAQLWNEQRKLILHDALYGFLLPSMEKEARSLMNSRAKNWLLLEYGKDLWNKIS
VGPYQRKDNDIISDDEAAPRVMACCWGPGKPATSFVMLDSSGEVLDVLYAGSLTLRSQNV
NDQQRKKNDQQRVLKFMMDHQPHVVVLGAVNLSCTGLKDDIYEIIFKMVEENPRDVGHEM
DELSIVYGDESLPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMVATLCGPGREI
LSWKLGSLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAASHEWLFAPLQFISGLGPRKA
ASLQRSLVRVGAIYTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRI
HPESYGLAQELAKEVYNRDIEGDANDDEDALEMAIEHVRDRPDLLRTYLLDRHITEKKRE
NKKETLYLIRRELIQGFQDWRNQYKEPSQDEEFYMIAGETEDTLAEGRIVQATVRRVQGQ
RAICVLESGLTGMLMKEDYSDDWRDISELSDRLHEGDILTCKIKSIQKNRYQVFLICRES
EMRNNRYQHVQNLDPYYHEDRSNRQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADEA
MQFLSDKDPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKEHKDITSLLRIGKTL
KIGEDTFEDLDEVMDRYVDPLVAHLKVMLSYRKFRRGTKAEVDELLRIEKSEYPTRIVYC
FGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHD
SSPSIRSVAAMVPMRSPATGGSSAASGGSGWGGSNNAGGWRGQSVDRDRSSTPGSRTGRN
DYRNGGNRDGHPSGLPRPYGGRGRGRGSYNMGNNSGNDTPNWDSGTNSRDDGWNNFPGAK
VQNPADRGSLPGGWGSGGSGSGSGSGGGGSSRWGGGSSGWGGGSGGGGVDNAGWGNDGTD
NKDSGWGGSSKKSSDNGWSG
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcacgtggtttctgatgaggaagatgagatcgagtatgaaggcgaagaggaa
caagaacccgttgagggggatgcagtcgaggatcgagatgatgatgaagatgaagatgat
gaagaagtgcaagatgaatatgagaaggatgggttcatagtagatgatattgatgaagaa
gaggaagaggaagaggaagagagggctgacagtgatgatgaaaggcagaagaagaagaag
aaaaggaagaaaaaggaagctgaggatgtccttgatgaagatgactatgagctgctccgc
gataacaatattaattaccgtccaaaggaaagcaaaaagtttaggcggttaaagaaaggt
cagggggatgctgatgaagatcgatttgggatttctgatgaggagtttgatggaagtggt
aggggtggaagaactgctgaggagaagcttaagcgtagcttatttggtgatgatgaagga
gcacctcttgaggatattgctgaggaggagcaaatagaagaagaagaagaggatggagac
attggtgaagaagatgaaatggcagacttcattgtagatgaagaagaagttgatgagcat
ggtgcacctgtgagacgaaagaaattgaagaaaaagaaatctaggcaggctccaggagtt
tcatcatcagctttgcaggaagcgcatgaaatatttggtgatgttgatgaacttttggag
cgtcgcaaacaagggttagattctagtgaatggagagaaaggagacttgaagatgaattt
gaaccgataatactctctgaaaagtatatgacagagaaggatgaccatattcggatgact
gatattccagaaagaatgcagatttcagaggaaagcactggtagtcctcctacagatgaa
gctagtattgaagaagaggccagttggatatataatcagctgctcggtggtacagtgcct
ttgtttggtcatagaggtgctgggtcacctaaagaggggcaggatttgtctataaccagg
agggatatctggagatttttggacctattgcatgtgcagaagttagatattccctttata
gctatgtatcggaaggaagagtgcttgagcctattaaaagatcctgaggaacaagaagtt
gatgatgataacaaggatgatttcgagagaccacctaaattaaagtggcacaaggtactt
tgggcaattcaagatttggacagaaagtggttgcttctacagaagcgaaagagtgctctt
gaatcttactacaagaagcgttttgaagaagaatctcgacggatatacgatgaaacaaga
ctagctttaaatgaacaactttttgattcaatctccaagtcactcaaggctgcagagtca
gagagagaggttgatgacgttgactcaaagtttaacttgcattttcctccaggtgaagtt
ggtgtggacgaaggtcagtataagaggcccaaaaggaaatcacaatatagtatctgcagt
aagtcaggtttatgggaggttgtgagcaagtttggttacagctctgagcaacttggcttg
cagttatccttggaaaaaatgggatatgaattggaggatgccagggaaacacctgaggag
atggcttcaaatttcacttgtgcaatgtttgagactcctcaagctgtgcttaaaggggct
aggcacatggctgcagttgagataagctgtgagccatgtgttaggaaatatgtccgtagt
atctttatggataatgctgtagtctcaacaagtccaactcctgatggaaatttagcaata
gattccttccatcagtttgctggagttaaatggttgcgggagaagccgttgagaaaattt
gtggatgcacaatggctccttatccagaaggctgaagaggagaagcttatccaagtcact
tttaagttgccagatgattctcttgataagttgataagtgactgcaatgaacattatctt
agtgatggtgtcagcaaatctgcccagctgtggaatgaacagaggaagttaatcctacat
gatgcactttatggttttcttctgccttcgatggagaaagaagctagatcattgatgaat
agtagagctaaaaactggttactcttggaatatggaaaggatttgtggaataaaatttct
gtggggccgtatcaacggaaggataatgatattatctcagatgatgaagctgcaccaaga
gtcatggcttgctgttggggcccaggaaagcctgcaacctcttttgtaatgttagattca
tcaggagaggtgctagatgtgctttatgctggatctttaactttacggtctcaaaatgtt
aatgatcaacagcgtaagaaaaatgaccaacaacgtgtactgaagtttatgatggatcac
caaccacatgttgtcgttttaggagctgtaaacctgtcctgtactgggctgaaggatgat
atttatgagatcatttttaaaatggtggaggaaaatcccagagatgttgggcatgagatg
gatgagctaagcatagtatacggagatgaatctttgcctcgcctttatgaaaactctcga
atttcatcagaccagctgcctggacagtcaggcattgttaagcgggctgttgctcttggg
cgctatttgcaaaatccattggcaatggttgcaacattatgtggacctgggagggagatt
ttgtcttggaagcttggttctttagagaattttctcactcctgatgagaagtatgggatg
attgaacaggttatggtagatgttacaaaccaggttggcctggatattaatttggctgca
agccatgaatggttatttgctcctcttcaattcatatctggccttgggcctagaaaggcg
gcatctttacagagatccctagtaagagttggggcaatttacactcggaaggactttgtg
acagcccacggtcttggcaaaaaggtgtttgtcaatgcagttggctttttgcgtgttcgt
cggagtgggctggctgctagcagcagccagttcattgatcttttggatgatacaagaata
catccagaatcttatggtcttgcacaggagttggcaaaagaggtatataatagggacatt
gaaggtgatgcaaatgatgatgaagatgcattggagatggctatagaacatgtgagagac
cggcctgatttattgagaacctatcttctggacaggcatattactgaaaagaagcgtgag
aataagaaagagacattatatctcataagaagggaattaatacagggtttccaggattgg
cgtaatcagtataaggaaccgagtcaggatgaggaattctatatgattgcaggtgaaact
gaagatacccttgctgaagggaggattgtgcaagccacagtccgaagggtacaaggtcaa
agagcaatatgtgtgcttgaatcaggattgactggaatgcttatgaaggaagattattct
gatgattggagggatatttctgagttgtctgacagacttcatgaaggtgacattctcacc
tgcaagattaaatcaattcagaagaacagatatcaggtgttcctaatttgtagagagagt
gagatgagaaataaccgatatcagcatgtacaaaaccttgatccatactatcatgaagac
aggagcaaccgtcagagtgagcaggaaaaggctcgaaaagaaaaggagcttgcaaagaaa
cattttaagccacgaatgattgttcatcctcgcttccagaatataacagctgatgaagca
atgcagttcttatccgacaaggatccaggtgaaagcatcattcgtcctagttctcgtggg
ccttcttatttaacattgactctcaaagtttatgatggagtgtatgctcacaaggacata
gttgaaggtggaaaggaacataaggacatcacaagcttgcttcgaattgggaagacacta
aaaattggggaggatacttttgaggatttggatgaggtaatggatcggtatgttgatccc
ttagtggcccacctgaaggtaatgcttagctatcgcaagtttaggagaggcaccaaagca
gaagttgatgagctcctaaggattgagaaatctgagtacccaacaaggatagtttattgt
tttggcatatcacatgaacatccgggcaccttcattctaacttacattcggagtacaaat
cctcaccatgagtacattggtctgtatcccaagggattcaagtttcggaagaggatgttt
gaggacattgatcggcttgtggcatattttcagaggcatattgatgatccgcagcatgat
tcatcaccttcaattagatcagttgcagcaatggtaccaatgcgaagccctgccactggg
ggctcttctgcagcatctggtggtagtggctggggtggttcaaacaatgctggtggctgg
agaggccagtctgttgacagggatcgttcttctacaccaggttcaagaacaggccgaaat
gattacagaaacggaggtaacagggatgggcatccaagtgggcttccacgaccatatggt
ggccgtggccgtggtcgaggttcatataacatgggtaataattccggcaatgataccccc
aactgggattctggcaccaatagcagggacgatgggtggaacaattttcctggtgctaaa
gttcaaaatccagctgacaggggatctttgcctggtggttggggcagtggtggaagtgga
agtggaagtggaagtggtggcgggggtagcagtcgatggggtggtggtagcagtggttgg
ggtggaggtagtggtggtggtggggttgacaatgcaggctggggaaatgatggtactgac
aacaaagattctggatggggtggttcttccaagaaaagttcagacaatggttggtcagga
tga
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integrated database retrieval system
