Mangifera indica (mango): 123197857
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Entry
123197857 CDS
T07684
Name
(RefSeq) exosome complex component RRP43 isoform X1
KO
K12586
exosome complex component RRP43
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123197857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123197857
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123197857
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
123197857
NCBI-ProteinID:
XP_044468253
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Position
15:complement(5220894..5225131)
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AA seq
336 aa
AA seq
DB search
MGLPEASESEDLSSKMEVDAFRRLFPLRYFERHLAESIRPDARPVGRARDTTVSLGAVAC
ADGSALAKIGSTTMLAAIKMEVMTPSLEGPDEGCVAIDFHLPPICSPNIRPGRPAEAAPV
ISKQLSDTILSSGMINLKELSLVSGKAAWMVYLDIYCLDADGALFDAALLSAVAACSHLQ
IPVVSLDFEGKIVMASGEQKVEKLEKEAVNKERRKLTLSSIPLSLTCILHKKHILVDPTA
EEESIMDTLVTVVLDSSGQLVSLYKPGGPVLAYTSAVQSCIALTRHRVKELQEILDEAIS
DANLYVKKQWMSAKCLKWSFEFKHRGLFLLFVFLYY
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggggttgccggaggcttctgagtctgaggacttatcatcaaagatggaggtggatgca
ttcagacgcctcttccctcttcgatattttgagcgtcatttggctgaatctatacgccct
gatgctaggcctgttggaagagctagagatactactgtatctcttggtgctgttgcatgc
gctgatggatcagcgctggcgaagattggttcaaccaccatgttggctgctatcaaaatg
gaagtcatgaccccttccttggagggaccagatgagggctgcgtagctattgatttccac
ttgcctccgatatgttctccaaacattaggcctggcaggccagcagaggcagcaccagtt
atatcgaagcagttatctgacactattttaagttctggcatgattaatctgaaggaacta
tcattagtcagtggaaaagctgcttggatggtgtatttggacatatattgcttggatgct
gatggtgctctttttgatgctgcattactttcagcagttgctgcttgctctcatttgcaa
atccctgtggtttctttggattttgaaggaaaaattgttatggcgtctggcgaacagaag
gtagaaaagttggaaaaagaggcagtcaataaggagagaaggaaacttacactgagcagt
attccactctcactgacatgcatactgcataagaaacacatcctcgtagatccaactgct
gaggaagaatcaataatggatactcttgtgactgttgtcttagattcgtctggtcaactt
gtgtctttatacaaaccaggtggaccagttcttgcctatacatcagctgttcagagttgc
attgcattaacaaggcatagagtaaaggaacttcaggagatattagacgaagcaatttct
gatgcaaatttgtatgtgaaaaaacaatggatgagcgcgaagtgtctcaagtggagcttc
gaattcaagcaccgaggcttatttctgctttttgtttttttatactattaa
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