Mangifera indica (mango): 123198078
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Entry
123198078 CDS
T07684
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
minc
Mangifera indica (mango)
Pathway
minc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
123198078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
minc03400
]
123198078
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
123198078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
123198078
NCBI-ProteinID:
XP_044468589
LinkDB
All DBs
Position
15:10539429..10547812
Genome browser
AA seq
961 aa
AA seq
DB search
MRTRRNSMTQNSSSDKENAVRTVQGSEGGSPVGSQNESGTLAETSKEAVGKLLRRWGNGR
GSKGSKKQDNSVTMRKSGPKVHESQVLEKRVTWNDVDGRGCSKDAIGITSMEVDEERVEE
LQDNLLDKSKEMDDSDWEDGSIPVNHSTKNDLESHIKGVTIEFDAGDSARQKAVRRATAE
EKELADIVHKVHLLCLLARGRIIDSACDEPLIQASLLSLLPAYMLKVSEVPKLTAKALSP
IVSWFNDNFHVRNSDSTGRSFPSALAYALENREGTAEEIAALSVALFRALKLITRFVSIL
DVSSLKPEADKNESLDQDGGRSGRIFSSPTLMVTRPQEVSSSLDKLISCNKKENVREKSS
RVSSKCNNRSSTSCNTQSKKSAIADELNDRTADSLLCDAHCDTSEACHSKESQGLKRKGD
LEFEMQMQMALSATAAGSCESNFGSDEKNLKSDENVSSPFKRMKRIENIESSPSCEGIST
AVGSRKVGSPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAASACKITLRYVVAF
AGHGAKDVTRRYCMKWHKIASKRVNPAWWDVVLAPLRGLESGATGGMMHLEKNHGNLAGN
SDHNVESSGKSSSVTTRNSLEDMELETRALTEPLPTNQQAYRNHQLYAIERWLNKYQILH
PKGPVLGFCSGHPVYPRTSVQTLKTKERWMQEALQVKANELPAKVIKNSTKLKKGQVYEA
EDHDEVDSKGNIELYGKWQLEPLRLPHAVNGIVPKNQRGQVDVWSEKCLPPGTVHLRLPR
IFSVAKRLEIDYAPAMVGFEFRNGRSTPVFDGIVVCCEFEDIILEAYAEEEGRRVEEQKK
RMEAQAISRWFQLLSSIVTRQRLNNRYGDGSSSQISSAIQNIKNNESNLQVGDIQDDKQP
HECRNVDTQNTKLDAPSVALTAEHEHEHEHVYLIEDQSLDEESSVRTKRCRCGFTIQVEE
L
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccagacgcaattccatgactcagaactcctcttcagataaagagaatgcagtc
agaacggtgcaaggttctgaaggcgggagccctgtagggtcacagaatgaaagtggaacc
cttgctgagacatcaaaggaggcagttgggaaacttcttagacgatggggtaatggtcgg
ggatctaaggggtctaagaaacaagataattctgtcacaatgcgaaagagtgggccaaaa
gtacatgaaagtcaagttttagaaaaaagagttacatggaatgatgtggatggcagaggg
tgtagtaaagatgcaattggaatcacgtcaatggaagttgatgaggaaagagttgaagaa
cttcaggacaaccttttggacaaaagcaaagaaatggatgactcagattgggaagatggt
tcaatccctgtaaaccattccaccaaaaatgatctggagagtcatataaagggggtcact
attgagtttgatgcaggggattctgctaggcagaaggctgttcgtcgtgctactgctgaa
gagaaggaattggctgatattgtgcataaggtccatctactgtgcttacttgcaaggggc
aggataatcgacagtgcctgtgatgagcctcttattcaggcctcgctactttctcttctg
ccagcatatatgttgaaagtatcagaggtcccaaagcttacagctaaagctttatctcct
attgtcagttggtttaatgacaactttcatgtcagaaactcggatagcacagggagatca
tttccttcagccttggcctatgctcttgaaaatcgtgaaggcactgcagaagagattgcg
gcattgtctgtggcattatttagagctttgaagcttataacccggtttgtttctattctg
gatgtttcctccttaaaacctgaggctgataaaaatgaatctttagatcaagatggcgga
agaagtgggagaatattcagttctccaactttgatggtaacccgaccacaagaagtctct
tcgtctttggataaattaatttcatgcaacaaaaaggagaatgtacgtgaaaagtcttca
agggtttcatccaaatgtaataatagaagctcaacaagctgcaatactcagtccaaaaag
tcggccatagctgatgagttgaatgatagaactgcagattcattattgtgtgatgcacac
tgtgatacctctgaagcctgccatagcaaggaatctcagggtttaaagagaaagggggat
cttgaatttgagatgcagatgcaaatggcactttctgcaacagctgcagggagttgtgaa
agtaactttgggtctgatgagaagaacctgaagagtgatgaaaatgtctcttctccattt
aaaagaatgaaaaggattgaaaatatagaatcctcaccttcttgtgagggaatctccact
gcagttggatcaagaaaggtaggatctcctctgtattgggcagaagtatactgtagtggt
gagaatttgacgggaaaatgggtacatgttgatgctgccaatgcaatcattgatggagag
cagaaggtagaagctgcagcttctgcatgcaaaataactttgagatatgttgttgctttc
gctgggcatggagctaaagacgtgacccgcagatactgtatgaagtggcacaagatagca
tcaaaacgagttaatcctgcctggtgggatgtagttttggcaccgttgagagggttagaa
tctggagcaactggaggtatgatgcatttggaaaaaaatcatgggaacttggccggaaat
tctgaccataatgtggaatcttctggaaagagttcttctgttactaccaggaactcactg
gaggatatggagttggaaaccagggcactaactgagcctcttcccactaatcagcaggcc
tacagaaaccatcaattatatgctattgaaagatggcttaataaatatcagatacttcat
ccaaagggccctgttcttggattctgctctggtcatccagtttatccaaggactagtgtg
caaacgctcaagacaaaagaaagatggatgcaggaagcactacaggttaaagctaatgag
cttcctgcgaaggtgataaaaaattctacaaaactaaagaaaggacaggtttatgaagct
gaggatcatgatgaagttgattctaaaggaaatattgaactttatgggaagtggcaactg
gaacctttgcgtctgcctcatgctgttaatggaattgttcccaagaatcagcgtggtcaa
gttgatgtttggtctgagaagtgcctcccaccagggacggtacacttacggttgccaagg
attttctctgtggccaagaggctggaaattgattatgcacctgccatggttggttttgaa
ttccgaaatggtcgttctactcctgtctttgatggtattgtggtctgctgtgagtttgag
gatataatattagaggcatatgcagaagaagaggggagaagagtagaagaacagaagaaa
aggatggaagcacaagctatttccaggtggtttcaacttttgtcttccattgtaactcgg
caacggttgaacaaccgttatggggatggttcatcttcacaaatatccagtgccatacaa
aacataaagaataatgaatcaaatcttcaggttggtgatattcaggatgataagcaacct
catgagtgccgtaacgtagatacacagaacaccaaacttgatgctccttcagtggcacta
acagcagagcatgagcatgagcatgagcatgtatatcttatagaggatcagagtttggat
gaagagagctctgtgcggacgaagcgatgtcgttgtggctttacaatccaagttgaggag
ttatag
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