Mangifera indica (mango): 123198135
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Entry
123198135 CDS
T07684
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
minc
Mangifera indica (mango)
Pathway
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123198135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123198135
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123198135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_2
Motif
Other DBs
NCBI-GeneID:
123198135
NCBI-ProteinID:
XP_044468694
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Position
15:140451..160100
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AA seq
766 aa
AA seq
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MADSNFKDTTAETIDKYNVEAAEILANSVLHLPITQSAPIYEQLLSVFPTAAKYWKQYVE
AHMAVNNDDATRQIFSRCLLNCLQVPLWRCYIRFIRKVNEKKGVEGQEETRKAFDFMLSH
VGSDIASGPVWLEYITFLKSLPALNTQEESQRMTAVRKAYQKAIVTPTHHVEQLWKDYEN
FENSVSRQLAKGLLSDYQPKYNSARAVYRERKKYVDEIDWNMLAVPPTGSYKEELQWLAW
KRLLAFEKGNPQRIDNVLSNKRIIFTYEQCLMYLYHYPDIWYDYATWHAKSGSIDSAIKV
FQRSLKALPDSEMLRYAFAELEESRGAIPAAKKLYESLLVDDVNATALAHIQFIRFLRRT
EGVEAARKYFLDARKSPTFTYHVYVAYALMVFCLDKDPQVAHNVFEAGLKRFMHEPMYIL
EYADFLSRLNDDRNIRALFERALSSLPPEESVEVWKRFTQFEQMYGDLDSMLKVEQRRKE
ALSRTGEEGATALEGSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLAKNVNKKVDKTAFP
NGPGVVGTDRSPSSLASNSAASAKVIYPDTSQMAIYDPRQKPGIGIAPGTIASGAAPNNM
SNPMVAMVGGGAINTFDDILKATPPALVAFLANLPAVEGPIPNVDVVLSICLQSDLSRGQ
AGKSRTFPAQTPAGPATSASDVSGSTKSHPVPSGSSFKPTRDKQFLKRKDLDRQDDDETT
TVQSQPLPRDVFRIRQMQKSRGSASSQTGSASYGSALSGDLSGSTG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggccgactctaacttcaaggatactacagcggagacgatcgataaatacaatgtcgaa
gcagctgaaattctcgctaatagtgttctgcatttacctattacacagtcggcgcccata
tacgaacaacttttatcggtcttccccacagctgcaaaatattggaagcagtatgtggag
gcacacatggctgtgaataatgatgatgctacaaggcagatatttagccgctgtttattg
aattgtctccaagttcctctttggagatgctacattcggttcattaggaaagtcaatgag
aagaagggtgtagagggtcaggaagagactagaaaagcttttgattttatgctcagccat
gttggatctgacatagcatcaggacctgtatggttggaatacatcacctttttaaagtca
ttaccggctcttaacacacaggaagaatcacaacggatgaccgctgtgcgtaaagcatat
caaaaagctattgttactccaacccatcatgttgagcaactatggaaggactatgaaaat
tttgaaaattctgttagtcgtcaactggccaagggacttttatctgattatcaacctaag
tataacagtgccagggccgtgtatagggaacggaagaaatacgttgatgaaattgattgg
aatatgcttgctgtacccccaactggctcttacaaggaagaattgcagtggttggcttgg
aagaggcttttggccttcgaaaagggaaatcctcaaaggatagacaatgtattgtccaac
aagcgaattatattcacgtatgagcagtgtctgatgtatttgtaccattatcctgacata
tggtatgactatgctacatggcatgcaaaaagtgggtctatagattctgcaatcaaagta
tttcagcgttctttgaaggctcttccagattcagaaatgctgaggtatgcttttgcagaa
ctggaggaatctcgtggagcaattccggctgcaaaaaaattatatgaaagccttttggta
gatgatgttaatgcaacagctctggcacatatacaatttattcgtttcctgagaagaact
gaaggagttgaagcagctcgcaagtacttccttgatgctcgcaaatccccaaccttcaca
taccatgtatatgttgcttatgctttgatggtgttctgccttgacaaggatccacaggtt
gcacacaatgtttttgaagccgggttgaaacgttttatgcatgagccaatgtatatcctt
gaatatgcagattttttgtctcgtttgaatgatgacaggaacattcgggctttatttgag
cgggctttgagctcactcccacctgaagaatccgttgaggtgtggaaacgattcacccaa
tttgagcaaatgtatggagatctagatagcatgttgaaggttgagcaaagaagaaaagaa
gctctttcgaggacaggtgaagagggagcaactgcattagagggttcattgcaggatgtg
gtatcacgctacagtttcatggatctttggccctgctcttctaaggatcttgatcatttg
gtccggcaagagtggcttgccaaaaacgttaacaagaaagtggacaaaacagctttccct
aatggacctggagttgttggtacagataggagtccatctagcctggcaagcaattcagct
gcttctgcaaaagttatttatccagatacttctcagatggcgatttatgatccaaggcaa
aagcctggaattggaattgctcctggtacaatagcatctggagctgctccaaacaacatg
tctaatcccatggttgcaatggtgggtggtggagcaataaatacatttgatgatatactg
aaggcaacaccccctgcattggtagcgtttttagcaaacttacctgctgttgaaggtcca
ataccaaatgtggatgttgttttatcaatttgtttgcagagtgacttatctagagggcag
gctgggaaatcacggacttttcctgctcaaacaccagcaggccctgctactagtgcaagt
gatgtttctggctccaccaaatcccatcctgtcccaagcggttcctcatttaaaccaaca
agggacaagcaattcctgaaaagaaaggatttggacaggcaagatgatgatgaaacaaca
acagtgcaaagccagccattaccaagggatgtttttaggatacgacagatgcagaaatct
cggggaagtgctagttcacagacaggatcagcatcatatggaagtgctctctctggagat
ctctctggtagcactggctga
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