Mangifera indica (mango): 123198625
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Entry
123198625 CDS
T07684
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03020
RNA polymerase
minc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123198625
09124 Replication and repair
03420 Nucleotide excision repair
123198625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123198625
03400 DNA repair and recombination proteins [BR:
minc03400
]
123198625
Enzymes [BR:
minc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123198625
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123198625
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123198625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
123198625
NCBI-ProteinID:
XP_044469283
LinkDB
All DBs
Position
16:893841..902655
Genome browser
AA seq
1844 aa
AA seq
DB search
MDTRFPYSPAEVAKVRLVQFGILSPDEIRQMSVVQIEHSETTERGKPKVAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEEDHK
FKQALKIRNPKNRLKKILDACKNKTKCEGGDEINVQGEDGEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKAQRKKSDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPNYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPQPAILKPRPLWTGKQVFNLIIPKQIN
LMKAAAWHSDLDKGLLTVGDTLVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMETINETISKAKDDVKTLIRKSQEKSL
EPEPGRTMMESFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQT
LDSLKMKKSEFDKTFRFEMDQENWNPNYLLQEFIDDLKTIKELQDVFDAEVQKLEADRFQ
LATEIATSGDSSWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVP
GDDPLSVEAQKNATLFFNILLRSTFASKRVLQEHRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PGINSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIDEDVEFVKSYYEMPDEEV
APEKISPWLLRIQLNREMMVDKKLSMAAIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKSNKFDENQGFKS
EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY
LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLDFGMTPARSPISGTP
YHDGMMSPSYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPVYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPTYSPTSPTYSPTSPSYGPQSAKYS
PSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSGPSFSPSSPYKSGVSPDY
SPGSPPYSVGYSPSAPGYSPSSTSQYSPQTDRDDKSTKDERYKK
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atggacacgcggtttccttactctccggcggaggtcgccaaggtccgcctggtgcagttc
ggcattctcagccctgacgagattaggcaaatgtcagtggtacagattgagcatagtgaa
acaactgagaggggaaagccaaaggtagctggtctaagtgatcctcggcttggtacaatt
gataggaagatgaagtgtgaaacttgtactgcaaacatggctgagtgtcctggtcatttt
gggcatttggagcttgctaagccaatgtttcacattggctttatgaagactgtcctcagc
attatgcgatctgtttgctttaattgctccaaaatcctagcagatgaggaagatcacaag
tttaagcaagccttgaaaataaggaatcccaaaaacaggcttaaaaagattctggatgct
tgcaaaaacaaaactaaatgtgaaggaggtgatgagattaatgtccaaggtgaagatggt
gaagaacctgttaagaagagtaggggtggctgtggtgctcagcagcctaagctgactatt
gaaggcatgaagatgattgctgagtacaaggctcaaaggaagaagagtgatgatccggag
caactgcctgaacctgttgaaaggaagcagacacttactgctgaaagggttcttagtgtt
ttgaagaggattagtgacgaggactgccaactgttagggttgaatcccaactatgcccgt
ccagattggatgattctgcaggtccttcccattcctccacctcctgtgaggccctctgtg
atgatggatacctcctccaggagtgaggatgatttaactcatcaattggcaatgattatt
cggcacaatgagaatttgaggagacaggaaaggaatggggcacctgcacatattatatca
gaatttgcacaattattacagttccacatagctacctattttgacaatgaattgcctggg
caaccaagggctacacagagatcaggtagacctataaaatcaatatgtagtagacttaag
gcaaaggaaggacggatcaggggtaatttgatgggtaagcgagtggatttctcagcacga
actgttataacaccagatccaaccatcaacattgatcagctgggagtaccgtggagtatt
gcattaaatctcacttatccggaaacagtgactccgtataacattgaaaggttaaaagag
cttgtcgaatatgggccacatcctccacctggcaaaactggtgccaaatatattataagg
gatgatggtcaaaggcttgatcttcgatacttgaagaaaagtagcgatcaccacttggaa
cttggttataaggtggagcgacatctcaatgatggagactttgttctttttaatcgccag
cccagtcttcacaaaatgtctatcatggggcatagaatcaagattatgccatactcaact
ttccgcctgaatctatctgtcacttcaccatacaatgctgattttgatggggatgaaatg
aatatgcatgtacctcaatcatttgaaacaagagcggaagttttggagttaatgatggtg
cctaagtgcattgtgtcccctcaatcaaatcggcctgtaatgggcattgtccaggatact
ctattaggatgtcgtaaaatcaccaaaagggacaccttcatagagaaggatgtattcatg
aacatcttgatgtggtgggaagattttgatggcaaaattcctcaaccggccattttgaaa
ccacggcctctttggaccggaaaacaagtttttaatctcattatcccaaagcagataaat
ctaatgaaagctgctgcctggcactcagatcttgacaaaggcttacttaccgtaggggat
actctagtccgtatagaaaagggggagctccttaccggaaccctttgcaagaagacactt
ggcacatcaactggaagtcttattcatgttatttgggaggaggttggtccagatgcagct
cgcaaatttttgggacatacacagtggcttgttaattattggcttctgcagaatggtttt
agcattggaattggggatacaattgctgatgcagcaacaatggaaacgattaatgaaact
atttcaaaagcaaaagatgatgtcaaaactctaatcaggaaatcacaagagaaaagctta
gagcctgaacctggcagaactatgatggagtcatttgaaaacaaagtgaatcaggttttg
aatagggctcgtgatgatgctggaagcagtgcacagaaaagtttatcggagagcaataat
cttaaggcaatggtgacagcgggatccaaaggaagtttcatcaatatatcacagatgact
gcttgtgtcggacagcagaatgtggagggtaagcgtataccctttgggtttatagatcgg
acattgcctcatttcaccaaagatgactatgggcctgaaagtcgagggtttgtggaaaac
tcatacctccgtggactgacaccacaagagttctttttccatgctatgggtggtagggaa
ggtcttatagatactgcagttaagacatctgagactgggtacatccagaggcgtctggtg
aaggctatggaagacattatggttaaatatgatggcactgtaaggaactcattgggtgat
gtaatccaatttctctatggggaagatggcatggatgctgtctggattgaatcacagact
ctggattctctgaaaatgaagaaatcagaatttgataagactttcagatttgagatggat
caggagaactggaacccgaattatctgttacaagaatttattgatgatttgaaaacaatc
aaagaattgcaagatgtgtttgatgctgaagttcagaagcttgaagcagatagattccaa
cttgcaacagagattgcaacctcaggtgatagttcttggcctatgcctgttaaccttaag
agacttatctggaatgcacaaaagacttttaaagttgatccacgaaggccctctgatatg
cacccaatggaagtggtggaagctattgacaagctccaggagcggctgaaggttgtccct
ggtgacgatccattgagcgtggaagcccaaaagaatgccacactattcttcaatattttg
ctgcgcagcacttttgccagtaaaagagtgttgcaggagcataggcttactcgcgaagca
tttgagtgggttattggtgagatagagtcacgattcttgcaatcacttgtggcacctggg
gaaatgattggttgtgttgctgcacagtcaattggtgaacctgccactcagatgactcta
aatacattccactatgctggtgttagcgcaaagaatgtcactctcggtgttcctaggttg
agggagattatcaatgtggctaagaaaattaaaacaccttctctttctgtttatctgaaa
cctggaattaactcaacaaaggaaagggccaagaatgtgcaatgtgcattggaatacacc
acccttcgtagcgttactgaagctactgaagtatggtatgatccagatccaatgagcaca
ataattgatgaggacgttgagtttgtcaagtcatattatgagatgccagatgaggaggtt
gcgcctgaaaaaatatctccttggttgcttcgtatccagttgaatcgggaaatgatggtt
gataagaagttaagtatggctgccattgctgaaaagattaatcttgagtttgatgatgat
ttgacttgtatatttaatgatgacaatgctgagaaacttatcctgcgtattcgtatcatg
aatgatgaagccccaaagggtgaacttaatgatgaatcagcagaagatgatgttttcctg
aagaagattgagagtaacatgcttacagaaatggctttgcgaggtattccagatatcaac
aaagtatttattaaaaagggtaaatcaaacaagttcgatgagaatcaaggattcaagtct
gaggatgagtggatgctggatacagaaggtgttaatcttttagctgttatgtgtcatgaa
gatgttgatgcaaggagaacaactagcaatcacttaattgaaattattgaagttcttggg
attgaggcagttcgtcgggcactgctggatgaattgcgtgtggtcatatcctttgatgga
tcctatgtgaattatcggcatttggctatcctgtgtgatacgatgacctatcgtggccac
ttgatggccatcactcggcatggaatcaatcgcaatgatactgggccaatgatgagatgc
tcatttgaagaaactgtagacattcttcttgatgctgcagtgtatgctgaatcggactat
ttgaggggtgtcactgagaatataatgcttggccagcttgcaccaattgggacaggagac
tgttcattgtatctcaatgatgagatgcttaagaatgctattgaacttcagctgcctagt
tatatggaaggtttggactttggcatgacacctgctcgttctcccatttccggaactcct
tatcacgatggcatgatgtctccaagttacttgtttagcccaaatctccgtctgtcacct
gttacagatgctcagttttctccttatgttggtggaatggccttttcacctacttcatct
ccaggctatagcccatcatcacctggatatagtccatcatcgcctggatatagtcccaca
tcacctggatatagccccacctcacccggatatagccccacttctcccggatatagcccc
acttcaccaacctatagtcccagttctccaggttatagtccaaccagtcctgcctattca
cctactagtccttcttactcacctacatcgcctagttacagccctacctctccaagctac
agccccacctcgccaagctacagccctacctctccaagttacagtccaacttcacctagt
tatagtcctacttctccagtgtacagccccacctcacctgtatacagtccaacttcaccg
tcttacagcccaacgtctccttcttacagcccaacatctccttcctacagtccaacatca
ccttcttatagcccaacatcaccctcgtacagccccacatctccatcatatagccccact
tcaccagcatatagccccacttctcctggttacagcccaacttcaccgacatatagccca
acctcaccaacctatagccctacttcaccaagttacggtcctcagtctgccaaatacagt
ccgtcgctggcttattcaccaagcagcccaagattgtcacctgccagtccttacagtcct
acatctccaaattacagcccaacatcttcatcatattcacctacgtctccatcttattct
ccttcaggcccttcatttagtcctagcagtccatataaatctggagtaagccctgactat
agcccgggttctccaccatacagtgttggatactcgcctagtgcgccaggctactctcct
tcatcaactagtcagtactcccctcagacagacagggatgacaagagcaccaaggatgaa
aggtacaaaaaatga
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integrated database retrieval system
