Mangifera indica (mango): 123199048
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Entry
123199048 CDS
T07684
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123199048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123199048
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123199048
Spliceosome [BR:
minc03041
]
Complex C
Other components
Step II factors
123199048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11_1st
Helicase_C
OB_NTP_bind
IBR
DEAD
AAA_22
KH_SLS1_1
AAA_19
IBR_1
Rcat_RNF216
zf-RING_UBOX
WHD_HA2
zf-C3HC4
zf-C3HC4_2
ABC_tran
KH_1
nSTAND_NTPase5
DUF6827
Arc_MA
AAA_29
Motif
Other DBs
NCBI-GeneID:
123199048
NCBI-ProteinID:
XP_044469788
LinkDB
All DBs
Position
16:5346091..5359262
Genome browser
AA seq
1722 aa
AA seq
DB search
MKRSFHRNNSYKPLPNYNYHYRPKLPPNSIRPQPPPAAAPNFVIHLSGPSSPFSQLHLEN
IVSKLNLCHQKVVYSPTECSFFFGQWVDTLNAMISLWESRLHGVHNLTPRLVANVVVPSD
KDELEERLKLLFADHIRSLMEGETVKKWQRKKDEKLDQIAAVSAKMSGRNRLSLKFFNEL
TEEKNVLQQERDLIVWRLREFKSSMRCLLKCIGCLSMEDECGEAALGFELFRLEDERFDW
GKIQALIFRECKRLEAGLPIYVRRQEILKRIYDDQVMVLIGETGSGKSTQLVQFLADSGV
GADRSIVCTQPRKIAAVSLAHRVREESGGCYGDDSVICYPTFSSAQQFDAKVIYMTDHCV
LQHYMNDRNLSGISCIIVDEAHERSLNTDLLLALIKDLLGRRFDLRLVIMSATADANQLS
DYFFNCKIFHVMGRKFPVDVRYVPYTTEGTSGSGIIASYVSDVVRMAAEVHRTEKEGTIL
AFLTSKMEVEWACEKFNSASAVGLPLHGKLTFEEQLRVFQNYPGKRKVIFATNVAETSLT
IPGVKYVIDSGMVKESRFEPGTGMNVLEVCWISQSSANQRAGRAGRTEPGRCYRLYSKWT
FESMSPNQEPEIRRVHLGVAVLRILALGMKNVQSFDFVDSPSAKAIEMAIRNLVQLGAIK
LNNNAYELTKDGQSMVKLGLEPRLGKLVISCFNNRLGREGVVLAAVMANASSIFCRVGTD
DDKLKADCLKVQFCHQNGDLFTLLSVYKEWESLPKEERNKWCWENSINAKSMWRCQETIK
ELEICLKKELNCIIPSYWLWDPQKCTEHDKLLKEIILSALSENVAMYSGYDQLGYEVALT
GQHVQIHPSSSLLIFGQKPNWVVFSELLSASNQYLVCVTAFDIESLSTLCSATLFDVSKM
EKQKLQVRKITAFGSILLKKFCGKSNSNVHSFLSRLWADYMDKRIGIEVNIDRNQILVFA
SSQDIDKVVGHVNNVLEYEKRWLLNECIEKCLYHGAGVSPSLALFGAGAEIKHLELEKRF
LTIDVFHSNANILGDKELLMFLEKKSSGSICAVHKFTGAGQDSDDNEKWGSVTFLTPDAA
RKAAELNEVEFGGSLLKVLPSRAAFGFDKTHSFPAVRARVSWPRRHSKGVAIAKCNFREA
ELLINDLSNLTIGGRFIRCEVSRKCMDSVVISGLDKELSEDEVLDELRKVTERRFLDFFL
VRGASVECPPCDVLEEALLREISHFMPKRNPQSNRVRVQVFEPESKDAFIRSLITFDGRL
HLEAARALEQLEGKTLPGCLTWQKIKCQQLFHTSLSCPVSVYSVIKEQLYSLISAPQKGT
ECRLDRNDNGSYRVRISANATKTVADMRRPIEELMRGKTINNADLSASILQHLFSREGIN
LKKSLQQETKTCIIFDRHNHNIRIFGSSENVAIAEEKLIQSLFAFHESKQLEIHLRGGAL
PPDLMKRVVKKFGPDLHGLKERVPKAEFTLNSRRQVICMKGDKELKQKVEEIVYEIALKS
DGTAERDGSEYACPICLCEVEESYRLEGCGHTFCQSCLVEQCDSAMKNLDSFPICCAHGG
CKTPILLADLRCLLTSEKLEELFRASLSSYVASSGGTYRFCPSPDCPSIYRVADPETEGE
PFFCGACFTETCTKCHLEHHPFLSCEKYKEFKEDPDVSLKEWCQGKENVKTCPVCGYTIE
KVDGCNHVECKCGKHVCWVCLDYYNTAEDCYGHMRAIHMSII
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atgaagagatcttttcaccgtaacaattcctataaaccactgcccaattacaactaccac
taccgtcccaaattgccgcccaattccatccgtcctcaaccacctccggccgccgctcct
aactttgttattcacctttctggtccttcttcccctttttcgcaactccacctggaaaac
attgtttctaagctcaatttatgtcaccaaaaagtagtttattcccccaccgagtgctct
ttcttcttcggccagtgggtcgacaccctcaacgccatgattagtctctgggagtcccgc
ctacatggggtccacaacttgactcccaggctcgttgcgaacgtcgtcgttccgtctgac
aaggacgaactggaggaaagattgaagcttttgtttgctgatcatatcaggagtttgatg
gaaggtgagacggtcaagaagtggcagaggaagaaggatgaaaaattggatcaaattgcc
gcggtttcggcgaagatgagtggtagaaatcggctgagtttgaaattctttaatgagttg
actgaggagaagaatgttttgcagcaagagagagacttgatcgtgtggcgattgagggag
ttcaagagttctatgaggtgtcttttgaagtgtatagggtgtctgagtatggaggatgag
tgtggagaagcagccttgggttttgagttgtttaggcttgaggatgagcgatttgattgg
gggaagatacaggctttaatttttagggagtgtaaaaggcttgaagctgggctacctatt
tatgttcgaaggcaggagattttgaagagaatttatgatgaccaggtgatggtattgatt
ggagagactggttctggaaagagtacacaactggttcagtttcttgctgactcaggagta
ggtgctgataggtccattgtatgcactcagcctcggaagattgctgctgtttcattggca
catagggtcagagaagaaagtggtgggtgctatggggatgattcagtaatatgttatccc
actttttcatcagctcagcaatttgatgcaaaggtaatatatatgacagaccactgtgta
ctgcaacactatatgaatgatagaaatttatctgggatttcgtgcatcattgttgatgag
gctcatgaaaggagcttgaacactgatctccttttggcactgattaaagatttactaggc
cggaggtttgatctaaggcttgtgataatgtctgcaacagcagatgcaaaccagctctca
gattacttctttaattgtaaaatttttcatgtgatggggagaaaatttccagtggatgtc
agatatgtcccttacactacggagggaacttctggttctggtatcattgcatcatatgtt
tctgatgttgtgaggatggctgcagaggttcacagaacagagaaagaaggtactattctt
gctttcctaacttctaaaatggaagttgagtgggcttgtgagaagtttaattctgcttcg
gctgttgggttgccattgcatggaaaacttacttttgaagagcagcttcgtgttttccag
aactaccctgggaaaagaaaagttatatttgccacaaatgttgcagaaacatctttaaca
attccaggggtcaagtatgtgattgattctggtatggtcaaagagagtcgttttgaacct
ggcactggtatgaatgttcttgaagtttgctggatcagccagagttctgctaatcaacga
gctggtcgtgctgggagaacagaaccaggcagatgttaccgactatacagtaagtggact
tttgaatcaatgtcccccaatcaggagcctgagatccgcagagttcatcttggtgttgct
gttctgaggatacttgcattgggaatgaagaatgtacagagttttgattttgtggattca
cccagtgccaaagccattgaaatggcaattaggaatcttgttcaattgggtgctattaag
ctgaacaataatgcctacgaattaacaaaagatggtcaatccatggttaaattgggcttg
gagcctcgacttggtaaattggttataagttgttttaataatcgcttgggccgggagggt
gttgttcttgctgctgtaatggcaaatgctagcagtatattttgccgagttggtactgat
gatgataagctaaaagctgattgccttaaggtgcaattttgtcatcaaaatggtgatctc
tttactctgctctctgtatacaaggaatgggagtctctccccaaagaggagagaaataaa
tggtgctgggaaaacagtattaatgccaaatccatgtggagatgtcaggaaacaatcaag
gagttggagatttgcctaaaaaaggaacttaattgtattattcctagttactggctttgg
gatcctcaaaagtgtactgagcatgataagttgttgaaggagattatactctctgccctc
tctgaaaatgtggctatgtactctgggtatgatcaacttggttatgaagtggcgctgact
ggacaacatgttcagattcatccatcaagttcattgttaatttttggtcagaagccaaat
tgggttgttttcagtgaactgctatcagcaagtaatcaatatttggtttgtgttactgcc
tttgatattgagagtttgtctaccctttgttctgctactttgtttgatgtttctaagatg
gaaaagcagaagttgcaagtcagaaagatcactgcttttggcagtatcctccttaaaaag
ttttgtgggaagtctaacagtaatgtccattcctttctatcacgtctttgggctgactat
atggataaaaggattggtattgaagtaaacatagatcggaatcagattcttgtttttgcc
tcttcacaggacattgataaggttgttggccatgtaaacaatgtattagagtatgaaaaa
agatggttgcttaatgagtgtatagagaagtgtttatatcatggagctggtgtctcacca
tctttggcactttttggagctggtgctgaaatcaagcatttagaacttgaaaagagattt
ttaaccattgatgtatttcattcaaatgcaaatatccttggtgataaggagcttttaatg
tttcttgagaaaaaatcctcaggtagtatttgtgctgtccacaagtttacaggtgctgga
caagatagcgatgataatgaaaagtggggcagcgtaacatttcttaccccagatgctgcc
agaaaagctgcagagctgaatgaagttgaattcggtggttctctgctgaaggtactacca
tcacgggcagcttttggatttgataaaactcattcattccctgcagtcagggcaagagtt
tcctggcctcgtaggcacagtaagggggttgcaattgctaaatgtaactttcgtgaggct
gaattattgattaatgatctttctaatcttacaattggaggcaggtttattcgatgtgaa
gtaagcagaaagtgtatggattctgttgtgataagtggacttgataaagaactttctgaa
gatgaagttttagatgaattgaggaaagttactgagaggagatttcttgattttttcctg
gtgagaggagcttctgtagaatgtccaccgtgtgatgttttagaagaagcactactaaga
gagatatctcactttatgcctaaaagaaatccccagagtaaccgtgttcgagtccaggtt
tttgagcctgaatcaaaggatgctttcatcagatctcttatcactttcgatggaagatta
catttggaggcagcaagagctttggagcaactggaagggaaaacattgcctggatgtctt
acatggcagaaaataaagtgccagcagttgtttcatacctcattatcttgcccagtgtcg
gtctattctgtaatcaaggagcaactttattctctgatttcagccccccaaaaaggcaca
gaatgccggttagacagaaatgacaatggttcctaccgggtgagaatatctgccaatgca
actaaaactgtggcagacatgagacgacctatagaagagctgatgagagggaagacaata
aataatgcagatcttagtgcatccattttacagcatctcttctcaagagagggcatcaat
ctgaagaagtcacttcagcaagagacaaaaacttgcattatctttgacaggcataaccat
aatataaggatctttggttcttcagagaatgttgctattgccgaggaaaaattgattcaa
tccctttttgctttccatgaaagcaagcaattagaaattcatctccgaggtggagctctt
cctcctgacctgatgaaaagagttgttaagaaatttgggccagaccttcatgggctcaaa
gagagggttccaaaggctgagtttacacttaatagccgccgccaggtcatttgcatgaag
ggtgacaaagagttgaagcagaaagtggaagagatagtttatgagattgccctgaagagt
gatggcacagctgagagagatggcagtgaatatgcctgccccatttgcttatgtgaagtt
gaggaaagttatcggcttgaaggttgtgggcatacattttgtcaatcatgcctggtggag
cagtgtgactcggcaatgaaaaacttggatagttttccaatatgctgtgctcatgggggc
tgtaagactcctattctacttgcagatttgaggtgtctcttaaccagtgagaagttggag
gaactgtttagagcttcgctaagctcatatgtggcatcgagtgggggtacctacaggttt
tgcccatctcctgattgcccttcgatatatcgagttgcagatccagaaacagaaggggag
ccattcttttgtggagcgtgtttcacggagacttgcaccaaatgtcacttggagcaccat
ccattcctttcttgtgaaaagtacaaagaatttaaggaagatccagatgtatcactgaag
gagtggtgccaagggaaagaaaatgtaaagacttgcccagtgtgtggatacacgattgag
aaggtggacggctgtaaccatgttgaatgcaagtgtgggaaacacgtttgctgggtgtgt
ttagattactataataccgcagaggactgctatggccacatgagggctattcacatgtca
ataatataa
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