Mangifera indica (mango): 123199368
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Entry
123199368 CDS
T07684
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
minc03036
]
123199368
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123199368
microRNA pathway
RISC loading complex
123199368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
PAZ
ResIII
dsrm
SNF2-rel_dom
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
123199368
NCBI-ProteinID:
XP_044470277
LinkDB
All DBs
Position
2:complement(3916397..3928686)
Genome browser
AA seq
1393 aa
AA seq
DB search
MDMVTTEQGSSDPLPFARCYQLEALEKAIKQNTIVFLETGSGKTLIAIMLLRHYAYLLRK
PSQYIAVFLVPQVVLVSQQAEAIKLHTDLKVGMYWGEMGVDYWDSVTWNEEIGKHEVIVM
TPQILLNGLRHSFLKLNMIKVLILDECHHTRGKYPYACIMTEFYHPLLKSGESDLPRIFG
MTASPIKSKGANSNHGYWENIDELETLMNSKVYTCRSESVIAQYIPFSTPKFKIYKYIEF
PYALYARLEDELNSLLSKHEISLNNLDLIDTKAESIRKKVLKIHSTLLFCVKELGVWLAS
KAAQSLSRYENDFFAWGHLDVLGGSIVKRFSSDAHKVFATVIPSGPGWSIGNNVKVNVDA
GLLTEKVACLFDSLLEYRALQDIRCIIFVQRVITAIVLEPLLNELLPQYCSWKTKYIAGN
NSGLQCQSKKKQNEIVEEFRQGLVNIIIATSILEEGLDVQSCNLVIRFDPSATVCSFIQS
RGRARMQNSDYLLMVKSGDHTTRSRLENYLASGEIMRKESLHHASHLCSHLGNGKHDEDY
YCVESTGAIVTLSSSVGLIHFYCSRLPSDGYFKPSPRFVIDKEMEICTLYLPKSCPIQIV
QVRGNVKTLKQTACLKACKQLHQIGELTGNLVPEMVVEEAEAQKSENDPYNDKQPIYFPP
ELVNEQAYIAKTMYQCYLIELKQNFNYDVPLHDIILAMRTELEDDILNVNFDMEVDRGTL
TVSLKYVGFIELTREQVLNCRRFQITIFRVLLDHNVKKLAKILDGFQLGKSPEADYLLLP
STNSHQPLIDWTSVASVLFPCNYGPKDHTNCPSEGNAHFVETKSGRFCVCMIRNSLVYTP
HNGYIYCITGILDHLNANSLLTMKDGAVITYKEYYKQKHGVHLCFNEAILLNGRHLFTVK
NYLNNNRNKERDPSHLTVELPPELCKVIMSPISWSTFYSFNFVPSIMHRFQSLLLAINLK
KMLLDDCVQNVTIPTMKVLEAITTKKCVESFHLESLETLGDSFLKYAASNYLFIKHQNNH
EGLLSVKKDRIISNASLCKLGCDHKIPGFIRTEPFDPKSWIIPGDNSGSYSLQEELLSDA
RKIYVSSKKTVKGKTIADAVEALIGAFISTAGESAGILFLSRIGIDVDFVNRPYQRHFQI
RAEKLINRAHLESLLNYKFHDSSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYIITI
HLYNKYPGMRPGLITDMRSASVNNDCYAQSSVKHGLHKHILHCSHELHKQIHATVESFEK
SPLGSTFGWESESSFPKVLGDVIESLAGAIYIDSGYDKEKVFESVRPLLEPLVTPETVRL
QPARELNELCQKQHFDLKKLIHTGINVVATVTVEVEANGRVFKYTSTADDKKTSKKLACK
EVLKSLKENISIM
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggacatggtcacaactgaacaaggttcttctgatcctcttccatttgccagatgttat
cagctggaagcattggaaaaggcaattaagcagaacacaatagtctttttggagactggt
tccgggaagactttgattgccataatgcttcttcgacactacgcttatcttctgaggaaa
ccttcacagtatattgctgtcttcttagtgccccaggttgttctggtctcgcagcaagcg
gaagctataaaactgcacactgatttaaaggttggaatgtactggggcgaaatgggagtg
gattattgggattctgtgacatggaatgaagagataggcaaacatgaggtaattgtgatg
acacctcaaattttgctaaatggcttgaggcacagctttttaaaacttaacatgatcaaa
gttttaattcttgatgaatgccaccataccaggggtaaatacccatatgcttgtatcatg
acggagttctatcaccccctattaaaatcaggtgaatctgatcttcctaggatatttggg
atgactgcatctcctataaagtctaaaggagctaactcgaatcatggttattgggagaat
attgatgaacttgagactcttatgaattcaaaggtttatacatgcaggagtgaatcagta
attgctcaatatataccattttcgactccaaagttcaagatatataagtatattgaattt
ccatatgctttatatgctcgcttagaagatgagttgaattccttattatcaaagcatgaa
atttctctgaataatttggatcttattgacacaaaagcagagtctataaggaagaaagta
ttgaagatacattcaactttgttattttgtgtaaaggagcttggtgtttggttggcttcg
aaggctgcacagagcttatcacgttacgagaatgacttttttgcatggggtcatttggat
gtcctcggtgggtcaattgttaaaagattcagttcggatgctcataaagtatttgccact
gtcataccatcaggaccagggtggtccattggcaataatgttaaagtcaacgtggatgct
ggacttctaacagaaaaagttgcttgcctatttgactctctccttgagtacagggctttg
caggacataagatgcataatttttgtgcaaagggtcattacagctattgtgcttgaacct
ctactaaatgagttgcttccacaatactgcagctggaagacaaaatatattgctggaaat
aattctgggctgcaatgccaatccaagaaaaaacaaaatgaaattgtggaagaattccgt
caaggccttgtgaacatcattattgcaacatcaatacttgaagagggtttagatgttcaa
agctgcaacttggttattagattcgacccttcagctactgtatgcagtttcatacagtcc
cgaggtcgtgctagaatgcaaaattcagattatttattaatggtgaagagtggggatcat
actactcgttcccggctggagaattatcttgccagtggagaaataatgagaaaagagtcc
ctgcatcatgcttcgcatctttgctctcatcttggaaatggtaagcatgatgaggactat
tattgtgttgaaagcactggagcaatcgtgacactcagttcaagtgttggtttgatacac
ttctattgctcacgacttccttctgatggatattttaaaccttctccaaggtttgttata
gacaaggagatggagatttgcacactgtatcttcccaagagctgccctatacagattgtt
caagttcgaggtaacgttaaaactctaaagcaaactgcatgtctcaaagcgtgcaagcaa
ctccatcaaattggtgagttaacaggtaatcttgttcctgaaatggttgtggaagaagcc
gaggcacaaaaatctgagaacgatccatataatgacaagcaacccatttacttcccacct
gaacttgtcaatgagcaagcttacatagccaagacaatgtatcagtgctacttaattgag
ttgaaacagaacttcaattatgatgttccacttcatgatattatccttgccatgaggact
gagcttgaggatgatattttgaatgtgaattttgatatggaagttgataggggtacattg
acagtcagcttgaagtatgttggatttattgagcttaccagagagcaggtccttaattgt
aggaggtttcagattactattttcagagttcttctggatcataatgtaaaaaaattggca
aaaattttggatggatttcaactagggaagagtcctgaggcagattatcttctgctccca
tccactaactcacatcagccgttgattgattggacctctgtcgcttctgttttatttcct
tgtaactatggtccaaaggatcacacaaactgtccatcggagggaaatgctcattttgtg
gagaccaaaagtggccgattttgcgtttgtatgattcgaaattctttggtctacaccccg
cacaatggttacatctattgtatcacgggtattttagatcatttgaatgcaaattcactt
ctaacaatgaaagatggagctgttatcacatacaaggagtactataaacaaaagcatggt
gtccatttatgttttaacgaagcaatattgctgaacgggagacacctttttactgtgaag
aactaccttaataacaacagaaacaaagagagagatccaagtcatttaactgttgaattg
cctcctgaactatgtaaagtaatcatgtctcctatatcctggagtacattttattctttc
aattttgttccgtctattatgcatcgttttcagtctttgctcctcgctatcaacttgaag
aagatgcttttggatgattgtgtgcaaaatgttactattccaactatgaaggttttggaa
gcaatcacaaccaaaaagtgcgtagagagttttcatctagaatcacttgaaactcttgga
gactcctttttgaaatatgcggctagtaattatttattcataaaacatcaaaataatcat
gaaggccttctgagtgttaaaaaggacaggataatttcgaatgcatcattgtgcaagcta
gggtgtgaccacaaaattccgggatttattcgcactgaaccctttgatccgaagagttgg
ataattcctggtgataattctgggagttattcattacaggaggagttactttctgatgca
agaaaaatttacgtaagcagtaaaaagacggtaaaaggtaagactatagctgatgcagtg
gaggcactaattggtgcattcatcagcacggccggtgaaagtgcaggaatactatttctt
agtagaataggcatagatgtagattttgtaaatagaccatatcagagacatttccaaatt
cgggcagagaagcttattaatcgcgcccatttagagtctctgctgaactacaaattccat
gattcatctctattggtggaagccctaacccatggttcttacatgcttcctgagatccca
agttgttatcagcggctggagtttcttggagatgctgtgttggactatattattacgatt
catttatacaacaaatatccaggaatgcgtcctggtttaattactgacatgagatctgct
tctgtaaataatgattgttatgcacaatcgtcggtgaagcatggattacataaacatatt
ctccattgttcacatgaactgcacaagcaaatacatgcaacagtggagagttttgagaaa
tcacctttagggtctacattcggctgggaatctgaatcgtcttttcccaaggtactcgga
gatgtcattgaatctctggcgggggcaatatatattgattcggggtacgacaaggagaag
gtctttgagagtgtaagaccacttttggagcctttggttactcctgagacggtgaggctt
cagccagcaagggagttgaatgaactctgtcaaaaacaacattttgacttgaaaaaactc
atccatactggaattaacgttgtcgctactgtcactgtagaggttgaagccaatgggaga
gtatttaaatatacttctactgctgatgacaagaagacatctaagaaattagcttgcaaa
gaagttttaaagtcattaaaggaaaacatttccataatgtaa
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