Mangifera indica (mango): 123199786
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Entry
123199786 CDS
T07684
Name
(RefSeq) uncharacterized protein LOC123199786 isoform X1
KO
K19026
spatacsin
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
minc03400
]
123199786
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
123199786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
DUF2418
Motif
Other DBs
NCBI-GeneID:
123199786
NCBI-ProteinID:
XP_044470777
LinkDB
All DBs
Position
16:10716195..10737925
Genome browser
AA seq
3239 aa
AA seq
DB search
MDCSLGAEGPAVLQLRKWDPSQFQLNLSEFREAFISPTKELLLLLSYQCEALLLPLVTGH
SIDRNITENCFDESLQDPCSSSLSRSDSKDNMPCTSGSVMDFDNGFSLDRNFSRSNNYPF
VCDVNSLAWGICGDSYNQHKDALFRELLFISGDQCVTVHAFCCPNDDSATTRQGDFEQGR
WVDWGPNSASVHHTLAEEASYLSCEGTGNVEDESVANGSRESSQSICREAGDDRSSRSVP
SRRWLRSFLTKAETIQSDGNICTRFPKKSSIPCSAKVVSFTILDSNLPLLQVPTQENSVA
IKESIQYTGLDLPTNSHLASTSLNIQSDVLPNYLGIDINRPYKCIRVFSSNSHCLIGFFL
KLVDPLSLNIGCESERNRRKYVLLVARLNRWGIQWVSAVKLEESLNIGLVSDWTDFSFSG
NLLVCLNSGGIIFFYDAMSGDHLAHLDILRTCGLDPHSNLHEQEKLHVGVDVQIKQVDEV
HKSSTYQHGGRLGRRMFKRVIVASYTSLLAVVDEYGVIYVVHVGDHILEKYNISVKLLPH
FQHLGLGMLVGWKAGGCDIGHQWVHSNSSSSCCHRLDISSERNNNVSLSDNIRNALLHEW
QHQNVHRNGGQCDLCLSGFSVTSKMICQSFHDSDLQYHLVRNIFLPTDRFGADDCIFFSP
LGITRLTKNHNIERQESAQIVHLDLHTDSAIHDDSCLNCGSEMFYLPGRKETSVGKAVGC
TFQGCLYLVTEDGLSVVLPAVSVPSNFLPVETIGYRQSCMKTGVGCQERSNLEMRETKQP
WSPWKVEILDRVILYEGPEEADRLCVENGWELKISRTRQLQMALEYLKFDEIQQSLEMLV
EVDLVEEGILRLLFAAIYLMCHKNGNDNEVSSASRLLTLASCFATKMIRKYGLQLHKDEA
YFLKGLNGMKLLSLPSTLLDEEQNDAKNSRRLSEMAHFLEIIRNLQCRLSAKFKKAGQGL
VDGREALSLAEPNLSENESRMSIVSAKAVSLDNSNENELSISLSTLGSNDTEKLALVPKD
YVSSQSELDLQYSGEASVHMSRGALSRKKTLPLENPKDMIARWKLDNLDLKTVVSDALLS
GRLPLAVLQLHLQRSTELATEEEHHDTFTEVRDIGRAIAYDLFLKGETGLAVATLQRLGE
DIEVCLKQLVFGTVRRSLRMQIVDEMRRYGFLGPHEWKMLESISLIERLYPSSSFWRTFR
GRKGEVAEDTSNLNSPGVYLHLLHSQLFSHLIIECGEIDGVVLGSWTNVNESSSEPVIDE
NDTHAGYWAAAAVWSNAWDQRTIDRIVLDQPFLMGVHVLWESQLEYHIYHNDWEEVSKLL
DVIPASVLSDGSLHIALNGSQPASTIASNSEFPDYGNYICSIEELDAVYVDVPDIKMFRL
SANVMCSVWLRRLMEQELARKFIFLKEYWEDTAEIVTLLARSGFITSRNIISSDDDSIDS
LSDIVGRSSVGTIQALHKLLTHHCVQQNLPNLLDLYFDYHKLVLDSNSLQSLQEAAGDCH
WARWLLLSRIKGCEYDASFFNARAIMSHNLVSGNNLSALEINDIICTVDDIAEGGWELAA
LATLMYAPAPIQNCLSSGGVNRHSTSAAQCSLENLRPALQQFPTLWRTLVAACFGQDTVC
TFVGLKVKNALSDYLNWRDNIFFSSGRDASLSQILPCWFPKAIKRLIQLFVQGPVGWQAF
PDLPTESSLYRDIEYFINAHGHADINAISWEATIQKHIEEELYDSSLHETGLGLEHHLHR
GRALAAFNHLLYVRVEKLKSEGRSSSSAQGQANVQSDVQTLLSPIQQGEESLLSSVIPLA
ISHFEDSVLVASSAFLLELCGLSASMLRVDIAALRRISSFYKSCETSDSHKQLSPKGSAF
HVVSHGVDITESLARALADEYLHKDNATKANQRENTNSISDTQPSRAPMLVLQHLEKASL
PVMLDGKTCGSWLSTGIGDGAELRSQQKADSQHWNLVTVFCQMHHLPLSTTYLGVLARDN
DWVGFLYEAQVGGYPFESVVQVASKEFSDPRLKIHVLTVLKGMQSRKKASSSSYMDATAK
SESSYLDENLYVPVELSRILADCEKQKNPGGALLIKAKELSWSVLAMIASCFPDATPLSC
LTVWLEITAARETSSIKVNDIASQIADNVAAAVEATNSMSAGGKPLAFRYNRRNPKRRRL
MEPISTDPLVASSNISNTYPDARILTAQDSNGEEGKIEDAYHINSQTDLVEDPASLSKMV
AVLCEQHLFLPLLRAFEMFLPSCPLLPFIRALQAFSQMRLSEASAHLGSFSARLKEESTH
SQANMGREGQTGTSWVSSTAVKAADTILSTCQSPYEKRCLLQLLAATDFGDWGSAATYYR
RLCWKINLAEPSLRKDDGLQLGDETLDDASLLTALEKNGHWEQARNWAKQLDASGGPWKS
TVHHVTESQAESMVAEWKEFLWDVPEERIALWGHCQTLFIRYAFPPLQAGLFFLKHAEAL
EKDLPARELHEMLLLSLQWLSGMITQCNAVYPLHLLREIETRVWLLAVESEAQVKSEGDF
SLTSSTRENTSNIIDRTANIITKMDNHMNSTRNRLAEKHDARENNQGNFKNQVLDANSST
TFGVNTKAKRRAKGYMPLRRQLVDTIDKSTEPEDSSIPLNFRNDSQLQDESLTMEISFPK
WEERVGPAELERAVLSLLEFGQIAAAKQLQHKLSPAHVPSEFVIVDVALKLAAISTPNRE
VSISMLDEEVRSVIQSYNIVTDQNFIYPLQVLESLATIFTEGHGRGLCKKIISVVKAANV
LGLPFLEAFDKQPIELLQLLSLKAQESFEEAHLLVQTHSMPASSIAKILAESFLKGLLAA
HRGGYMDSQKEEGPAPLLWRFSDFLKWAELCPSEPEIGHALMRLVITGQEIPHACEVELL
ILSHHFYKSSACLDGVDVLVALAATRVEAYVLEGDFPCLARLITGVGNFHALNFILGILI
ENGQLDLLLQKYSAAADTNTGTAEAIRGFRMAVLTSLKHFNPNDLDAFAMVYNHFDMKHE
TASLLESRAEQSCQQWFHRADRDQNEDLLDSMRYFIEAAEVHSSIDAGNKTRRACAQASL
VSLQIRMPDYKWLNLSDTNARRALVGQSRFQEALIVAEAYGLNQPSEWALVLWNQMLNPE
LTEDFVAEFVAVLPLQPSMLVELAKFYRAEVAARGDQSQFSVWLNGGGLPADWAKHLGRS
FRCLLKRTRDLRLRMQLATVATGFTDVIDSLTKELDRVPDIGAPLVLRRGHGGAYLPLM
NT seq
9720 nt
NT seq
+upstream
nt +downstream
nt
atggactgttctttgggtgctgaggggcctgctgtactgcagttgcgcaagtgggacccc
tctcagttccagttaaacctgtcagaatttcgagaagcctttatttctccaacgaaggag
ctgctattgttgctctcatatcagtgtgaagcattgctgctgccactggtcacagggcac
tctatagataggaacattacagaaaattgttttgatgaaagtcttcaagatccatgttca
tcttctctaagtaggtcagattcaaaggataatatgccatgcacttctggatcagtaatg
gattttgataatggtttttctcttgatcgtaatttttcaagatctaataattaccctttt
gtttgtgatgtaaactcactggcttggggtatatgtggggattcctataatcagcacaag
gatgccttgtttagagagcttctttttatttcgggcgaccagtgtgtgacagttcatgct
ttttgttgtcctaatgatgatagtgcaacgaccaggcagggtgactttgagcaaggtagg
tgggtggattgggggccaaattctgcatcagtacatcatacattggcagaggaggcttct
tatttgtcttgtgaaggcactggaaatgttgaggatgaatctgtggccaatggcagtagg
gagagttcacagagtatatgcagggaggcaggggatgataggtcatcaagaagtgttcct
tcaaggaggtggctgcgttcttttttaaccaaagctgaaactattcaatctgatggtaac
atttgtaccaggtttccaaagaagtcatcaattccttgctctgcgaaggttgtatcattt
accatactagatagtaatttaccacttctgcaagtccctactcaagaaaactctgtggca
attaaagagagcatacagtatactggtttggatttgcctacaaattctcatttggcttca
actagtctaaatattcagtctgatgtattgccgaattatctaggtattgacattaacaga
ccatacaaatgtattagagttttttctagcaattctcattgcttaattggattctttttg
aaacttgtggatccgttatctcttaatattggttgtgagagtgagagaaataggaggaaa
tatgtacttcttgttgctaggttaaatagatggggaatccagtgggtttctgctgtgaag
ttggaggaaagtttaaatataggcttggtgtctgactggacagacttctccttttctggt
aatcttctcgtgtgcctcaattctggtggcataatctttttttatgatgctatgtctggt
gaccatttggcacatcttgatattttacgtacctgtggtcttgacccacactcaaatttg
catgagcaagaaaaattgcatgtaggtgttgatgtgcaaattaagcaagttgatgaagtt
cataaatcatcaacttatcaacatggtggacgccttggtagaagaatgtttaaacgggtg
atcgttgcttcatatacctccctcttggctgtggttgatgaatatggtgtcatatatgtt
gtacatgttggtgatcacattcttgaaaagtataacatatctgtaaaattgcttccacat
ttccagcatttggggcttgggatgttggttggttggaaggctggtggttgtgatattggc
caccagtgggtgcattctaattcatcaagttcttgttgtcatagattagacatttcatct
gaaagaaacaacaacgtttctttatctgacaatattagaaatgctttgcttcacgaatgg
caacaccaaaatgtgcatagaaatggtgggcagtgtgacttgtgtttgagtggattttct
gttacatctaagatgatttgccagagttttcatgattctgatttacagtatcaccttgtg
cgaaacatctttcttcccacagataggtttggtgcggatgattgtatctttttttcacca
ctgggaatcactcgactgaccaaaaaccataatattgagaggcaagagagtgcccaaatt
gttcaccttgatctgcatacagattcagcaattcatgatgatagttgcttgaattgtggg
tctgaaatgttttatctaccgggcaggaaagaaacttctgttggaaaagcagttggttgc
acttttcagggttgtttatatctggtaactgaggatgggctatcagtggttctccccgct
gtttcagttccatcaaatttcctccctgttgaaacgattggctatcggcaatcatgcatg
aagacaggtgtaggatgccaagaaagaagcaatttggaaatgagagaaacaaaacagcct
tggtcaccttggaaggtcgaaattttggatagagttattctgtatgaaggccctgaagag
gcagatcgcttatgtgtggaaaatgggtgggagctgaaaatttctcggacgcgtcagctg
caaatggcattagaatacttgaagtttgatgaaatacagcaatctttggaaatgcttgtg
gaggttgatctggtggaagaaggcattctgagattactctttgctgctatttatctgatg
tgtcataaaaatggcaatgacaatgaggtatcttctgcatcaaggcttcttactttagcc
tcctgctttgctacaaaaatgattcgcaagtatggattacaacttcataaagatgaggca
tattttctaaagggattgaacggaatgaagttactttctcttccatcaactttattggat
gaagaacaaaatgatgcaaaaaattctaggaggctttctgagatggctcactttttggag
attattcgaaatttgcagtgtcgactgagtgcaaaatttaaaaaggctggccaagggctg
gtggatggtagggaggcattaagcttggcagagccaaatttatcagagaatgaatctcgg
atgtcgatagtttcagcaaaagcagtatcattagataactcaaatgaaaatgaactgtca
atttctctgtctaccctgggttctaatgataccgagaagcttgctttggtgcccaaagat
tatgtgagttctcagtctgagttggatctacaatattctggtgaagcatctgttcatatg
tctcggggggcactttctagaaagaaaacgcttcccttggaaaatccaaaggatatgatt
gcacgttggaaattggataatttggacctgaaaactgtagtcagtgatgctctactctct
ggtcgccttcctttggcagttcttcagttgcatcttcaacgttcaacagaacttgctact
gaggaagagcatcatgataccttcactgaagttcgtgacattggaagagctattgcttat
gatctatttttgaagggtgaaactgggcttgctgtagcaacattgcaaaggcttggggag
gatattgaagtctgccttaaacagttggtatttggcaccgtgaggagatctctacgaatg
caaattgttgatgagatgagaagatatggtttcttgggaccgcatgagtggaagatgttg
gagagtatatcactcattgagagactttatcctagtagtagtttctggagaacttttcgt
ggccggaaaggggaagtcgcagaagacacatcaaatttaaattctccaggagtatatttg
caccttttgcattcacagttatttagccatcttatcattgagtgtggtgagattgatgga
gttgttttgggttcatggacaaatgtcaatgaaagttcatctgaacctgtgattgatgaa
aatgacactcatgctggatattgggctgctgctgcagtgtggtctaatgcatgggatcag
agaaccattgatcgtatagtgctggatcaaccttttcttatgggtgttcacgtattatgg
gaatcacaactggagtaccacatataccataatgactgggaagaagtttccaaacttcta
gatgttattcctgcatctgtgctgtcagatggaagcctccatattgctttgaatggttca
cagcctgcttctactattgctagcaatagtgaatttcccgactatggcaattatatatgt
tctatagaagaactggatgctgtttatgtggatgtgccagatatcaaaatgtttaggttg
tctgccaatgttatgtgctctgtgtggttaaggaggctcatggagcaggaactagctagg
aaatttatttttttgaaggaatactgggaagacactgcagaaattgtaactcttttggcc
cgttcaggcttcattactagcagaaatataatttcatctgatgatgattctattgacagt
ttatcagatattgttggaagatcttctgttggtaccattcaagctttacataaattactt
acgcatcactgtgtgcaacagaacttgccaaatcttttggatctttactttgattaccac
aagttggttctagatagcaattcacttcaatcattgcaagaagctgctggagattgtcac
tgggcaaggtggctactcttatctaggattaaggggtgtgaatatgatgcttcatttttt
aatgctcgtgcaataatgtcacataatttggtttctggtaacaacctaagtgctctggag
atcaatgacattatctgtactgttgatgacattgcggaagggggatgggaattggcggct
ttagcaactctaatgtatgcccctgctccaattcaaaactgtttaagtagtggtggtgta
aacaggcacagtacttctgcagcccagtgctcgttggagaacttgcggcccgccttacaa
cagttccctacattgtggcgcacccttgtagctgcatgttttggacaagatacagtttgc
acttttgtaggccttaaagtgaagaatgctttatcagactacctaaattggcgtgacaac
atcttcttctcttctggacgtgatgcatcactttctcaaattctgccatgctggtttcca
aaggccataaagaggttaattcagctttttgttcagggaccggttggatggcaagcattt
ccagatctgcctacagaatcttcactatatagagacattgaatatttcataaatgcacat
ggacatgctgatattaatgctatctcatgggaagcaactatccagaagcatattgaagag
gaactttatgactcctcactccatgaaactggacttggacttgagcaccacttgcatcgt
ggtcgtgccttggcagcttttaaccatcttctttatgttagagttgagaagttgaaatca
gaaggccgatcaagttcttcagcacagggacaggcaaatgttcaatctgatgttcaaaca
cttctttcacctatccaacaaggcgaagagtcccttctttcatctgttataccgcttgct
atttcacattttgaagactctgttttggttgcttcatctgcttttcttctagagctttgt
ggcttatctgccagcatgctccgtgttgatatagcagctttgagaaggatatcctctttc
tacaaatcttgtgaaactagtgacagtcataagcaactttcacctaagggctctgcattt
catgtagtatcccatggagttgatataacagagtctctggctcgagcactggcagatgaa
tatctgcataaggataatgcaaccaaggctaaccaaagggaaaatacaaattcgattagt
gacacacagccttctagagctccaatgcttgtcctacaacatttggaaaaggcaagtctt
ccagtaatgttagatggaaagacttgtggatcttggctgtcaactggcattggtgatgga
gctgaattaagatcccaacaaaaagctgatagccagcactggaatttggttacagttttt
tgtcagatgcatcatcttcctctaagcacaacataccttggtgtattagcacgagataat
gattgggttggatttttatatgaagctcaagttggggggtatccttttgaatcagtggtc
caagtggcatcaaaggagtttagtgacccacgtctcaaaattcatgtgttaacagttttg
aagggcatgcaatcaaggaaaaaagctagttcttcatcttacatggatgctacagcaaaa
agtgaaagttcctatttagatgaaaatttatacgtccccgttgagctttctagaatttta
gcagattgcgagaagcagaaaaatcctggaggggccctcttgattaaagcaaaggagttg
tcctggtctgttttggcaatgattgcatcatgctttccagatgctacaccattatcctgc
ctaactgtttggctggaaattactgcagccagggaaacttcatccataaaggtgaatgac
atagcttcacagatagcagataatgttgcggcagctgtggaagccactaattccatgtca
gctggtggtaaaccccttgcatttcgttacaaccggcggaacccaaaacgtagacggctt
atggagccaatatccacagatcccttggttgcctcatctaatatatcaaatacttatcct
gatgcaagaatattaactgcccaggacagcaatggggaggaaggaaaaattgaagatgct
taccatattaacagtcaaactgatttagttgaagaccctgcttccctgtccaagatggtt
gcagtgctttgtgaacaacacttgtttcttcctctgttgagagcatttgaaatgttcctt
ccttcatgtcctttgttacctttcattcgagctcttcaggcattttcacagatgcgccta
tccgaagcatcagcacatcttggttccttctctgccagattaaaggaagagtcaactcat
tcacaggcaaatatgggaagagaaggccagactggaacttcatgggtcagctcaactgct
gtaaaagctgctgatactatcctttcaacttgtcaatctccttatgagaagagatgctta
ttgcaactccttgctgctactgactttggtgattggggatctgcagctacttactatcga
cgactctgctggaaaattaatttggcggagccttcactgcgaaaagatgatggtctgcaa
ctaggggatgagactttagatgatgcttcacttttaactgcattagaaaagaatggacat
tgggaacaagcacgcaactgggccaagcagttggatgccagtggtggaccttggaaatct
actgttcaccatgttacagaatctcaggctgaatccatggtggctgaatggaaagagttc
ctttgggatgtccctgaagagagaattgctttatggggccactgccagacactattcatc
agatatgcattccctcctttacaggctggattgttctttcttaaacatgcagaagcactt
gagaaagatcttccggctagagagcttcatgaaatgttgctgctttcacttcagtggtta
agtggaatgataacccagtgcaatgcagtttatccattgcatcttctgcgagaaattgag
actagagtatggctcttagcagtagaatcagaagctcaggtgaaaagtgaaggagacttc
agtttaaccagttccacccgggaaaatacttcaaatatcattgaccggactgcaaatatt
ataacaaaaatggataatcatatgaattcaacgagaaacagacttgcggagaaacatgat
gctagggaaaataaccaaggaaatttcaagaaccaagtgttggatgccaattcttcaact
acatttggggtaaatacaaaggcaaaacggagggcgaaaggctacatgccattaagacgg
caattagtagacaccatcgataaaagcactgaacctgaagatagttccataccgctcaac
tttaggaatgattctcaattgcaagatgaaagcctgacaatggaaatatcttttccaaaa
tgggaggaacgggttggacctgcagagctggaaagggctgttctttctcttctggagttt
ggacaaatagcagctgccaagcagctccaacataagttgtctccagctcatgtaccatct
gaatttgtaattgttgatgttgctttaaagcttgcagctatctcgacacctaatagagaa
gtctcaatatcaatgctcgatgaggaagtgcgttcggtcattcaatcatacaatatagtg
accgaccaaaacttcatctatccactgcaggtcttggagagtttagccactattttcact
gaaggccacgggcgtggtctatgtaagaagataatatcagtcgtaaaagctgcaaatgtc
ttgggtcttccattcttagaggcatttgacaagcaaccaattgaattgctacagcttctc
tctcttaaagcacaagaatcatttgaagaagcacatctccttgtgcaaactcattctatg
ccagcctcgagtattgctaaaattcttgctgaatccttcctaaagggtttactggctgca
caccgtgggggttacatggattctcagaaggaggaaggaccggctcctctattgtggaga
ttctcagacttcttgaagtgggcagagctttgtccttctgaaccagaaattggccatgca
ctcatgcgtttggtgattactggacaggaaataccacatgcttgtgaggttgagcttctc
attctctctcaccatttctacaagtcatcagcttgccttgatggagttgatgttcttgtg
gcccttgctgcaaccagggttgaagcttatgtgttggagggtgatttcccatgtttggct
cgcctgataactggtgttggaaacttccatgcccttaattttattcttggcattcttata
gaaaatggtcagctggatctcctccttcagaagtattctgctgcggcagatacaaatact
ggcactgctgaggctatcagaggattccgaatggctgttctcacatcattgaagcatttt
aaccccaacgaccttgatgcattcgctatggtctataatcactttgacatgaagcatgaa
acagcttctctcttagagtcgcgtgcagagcagtcctgccagcagtggtttcatcgtgct
gacagggaccaaaatgaagacctactagattccatgcgttacttcattgaagctgccgaa
gttcactcttccattgatgctggcaacaaaacacgtagagcctgtgcacaggcttccctt
gtgtctcttcaaattcgaatgccggattataaatggctgaacctttctgataccaatgca
cgacgagcactggttgggcaatctcgtttccaggaggctttaattgttgccgaagcctat
ggtcttaaccagccaagtgaatgggcactggtactttggaatcagatgctcaatcccgaa
ctaacggaagattttgtggctgaattcgtggcagtgcttcctctccagccttctatgctt
gttgaactggcaaaattctatcgggctgaggtggcagccaggggtgaccagtcccaattc
tcggtctggctgaacggcggaggtttgccagctgattgggctaaacatctggggagatca
ttcagatgcttgttgaagagaactagggatctgagattacggatgcagctggccactgtg
gcaaccgggttcaccgatgtaattgattcattgacaaaggagttggatcgggttcccgac
attggtgcaccactcgtacttcgaagagggcatggtggggcctacctcccattgatgtga
DBGET
integrated database retrieval system
