Mangifera indica (mango): 123200540
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Entry
123200540 CDS
T07684
Name
(RefSeq) LOW QUALITY PROTEIN: protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123200540
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
123200540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_14
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_6
TPR_11
TPR_7
TPR_9
ANAPC3
TPR_10
ARM_TT21_5th
ARM_TT21_C
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
123200540
NCBI-ProteinID:
XP_044471683
LinkDB
All DBs
Position
17:4124635..4139262
Genome browser
AA seq
1089 aa
AA seq
DB search
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR
QILEEGSSPEIDEYYADVRYERIAILNALGAYYTYLGKIETKQREKEEHFILATQYYNKA
SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADHDNVPALLGQACVEFNRGRYND
SLEMYKRALLVYPDCPGAVRLGIGLCRYKLGQFEKARQAFQRSLQVISENVEALVALAIM
DLHANEATGIRRGMEKMQRAFEIYPYCAMSLNYLANHFFFTGQHFLVEQLTETALAVTNH
GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS
ALTNFEKVLEIYPDNCETLKALGHIYIQLGQVEKAQEHMRKAAKIDPRDAQAFIDMGELL
ISSDTSAALDAFKTARTLXEKGGQEVPIEMLNNIGVLHFEKEEFELAQQSFKDALGDGIW
ITLLDNKVNTCAVDASASIFKYKYTQLFHQLEEDGRTVELPWNKVTVLFNLARLLEQLHN
SEAASILYHLILYKYPEYVDAYLRLAAIAKARNNLQLSIELVNEVLKVNGKHPNALSMLG
DLELKNDDWVKAKETFRAASDATDGKDSYSTLSLGNWNYYAALRNEKRNPKLEATHLEKS
KELYTRVLLQHASNLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL
AHVYFAQGNFALAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCKKTLLRAIHLA
PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRIFSQLSAASNLHLHGF
DEKKINTHVEYCKHLLDAAKVHREAAEREEQQTRQRQEAARQVALAEEARRKAEEQKKFL
LERRKQEDELKRVRQQEEHFQRIKEQWKSSSSKRRERPDNEDDEGGHSEKRRRKGGKRRK
KEKSPKSRYDTHDAEADMMDDQEEIDDEDANMNYRESHHTSDQEEYAEENAQDRLAAAGL
EDSDAEDEMPSSSAFRRRRALSESDDDEQYRKQTPSSPTRDTTAELQDIDGGVREDDDKM
NGDNGSEDD
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcgtgtacataccggtgcagaactcggaggaggaggtcagagtggcgctggat
cagctccctagagacgcctctgatatactcgacattctcaaggctgagcaggcacctctc
gatctctggctcatcatcgcgagagagtacttcaagcaagggaaagttgaacaatttcgt
caaattttggaggaagggtctagtcctgaaattgatgaatattatgctgatgtaagatat
gagagaattgccatcctaaatgctttaggggcttattacacctaccttgggaaaattgag
acgaaacaaagagaaaaggaggagcattttattctggcaacacaatattacaataaagcc
tcaagaattgacatgcatgaaccttctacttgggttgggaaaggtcaactcttactggct
aagggtgaagtagagcaggcatcaagtgcatttaaaattgtgttagaggcagatcatgat
aatgtccctgctcttctgggtcaggcatgcgttgagtttaatcgtggtcgctataatgat
tcattagagatgtataagagggccttgctagtctatcctgattgtcctggagccgtgaga
cttggaattggtctttgtcgctataaattgggacaatttgagaaagctcgacaggcattt
cagcggtctttgcaggtaatatccgagaatgttgaggctcttgttgcacttgctattatg
gatttgcatgcaaatgaagctactgggatcaggagaggaatggaaaaaatgcagagagca
tttgagatatatccctactgtgccatgtctctgaattatctggccaatcactttttcttc
acgggtcagcatttcttagttgagcaactgactgaaacagcgcttgctgtgaccaatcat
gggccaacaaaatcacattcttactataatttagctcgatcttatcacagcaagggggat
tatgaaaaagccgggctctactacatggcatctgtcaaagaaattaataagccccacgag
tttatatttccatattatggtttgggacaagtacaactgaagcttggagatttcagaagc
gcacttacaaactttgaaaaagttttggagatttatcctgataattgtgagacattgaaa
gctctcggtcacatatatattcaactaggacaggttgagaaggcccaggaacatatgagg
aaggcggcaaaaattgatccacgtgatgctcaggcttttattgatatgggggagctattg
atttcttctgacaccagtgctgctcttgatgcctttaaaactgcacgaactctanatgaa
aaagggggtcaagaagtcccaatagaaatgctgaataatattggtgttctgcattttgaa
aaggaagagtttgagttggctcaacaaagtttcaaggatgctctgggcgatggcatatgg
attactttgcttgataataaagtgaacacctgtgctgttgatgctagtgcatccattttt
aaatacaagtacacacaattatttcatcaacttgaggaagatggtcgtactgtggaacta
ccatggaataaggtcactgtgttatttaacctggccagattactggagcagttacataac
tcagaagctgcaagcatattgtaccatttgatattgtataagtatccagaatatgtagat
gcttatctgaggcttgctgcaattgcaaaagctcgaaataatcttcaactaagtattgaa
ctggttaatgaggttttgaaggtgaatggcaaacacccaaatgcattatctatgcttggt
gacttggaacttaaaaatgatgactgggttaaggcaaaagaaactttccgtgctgccagt
gatgcaactgatgggaaggattcttactccactctttctctggggaactggaattactat
gctgctcttcgcaatgaaaaacgaaaccctaagttggaagcaacccatttggaaaaatca
aaggaactctacaccagagttctactgcagcacgcatccaatctatatgctgcaaatggt
gctggagtggtcttagcagaaaaaggccactttgatgtttcaaaagatatttttacacag
gttcaagaagccgcaagtggaagtgtctttgtccagatgcccgatgtgtggataaatttg
gcacatgtttattttgcacaaggaaattttgctttggctgtgaaaatgtatcaaaattgc
ttgcggaaattttatcacaatacagactctcaaattcttctctatttagctcgcactcat
tatgaagctgaacagtggcaagactgcaagaaaacattactaagagctatccatttggca
ccttcaaattacacactaaggtttgatgcaggtgttgcaatgcaaaagttttctgcatcc
accctacaaaagacaaagaggactgcagatgaggtgcgttcaacagttgcagagttggag
aatgctgttcgtatatttagtcagttgtctgctgcttctaatcttcaccttcatgggttt
gatgagaagaagattaacactcatgttgagtattgcaagcacttactagatgctgcaaaa
gtacaccgtgaggcagctgagcgtgaagagcaacagactcgacagagacaagaagctgct
cgtcaggttgcattggctgaggaagcccgtcgtaaggctgaagaacaaaagaaatttctg
ttggagaggagaaaacaagaggatgagctaaaacgtgtgaggcaacaggaagaacatttt
cagcgtataaaggagcaatggaagagcagttcatctaaacgacgggaaaggcctgataat
gaggatgacgaaggcgggcatagtgagaagagaaggagaaagggtggaaagaggagaaag
aaggaaaagagtccaaagtcacgttatgatacacatgatgcagaagctgacatgatggat
gatcaggaagagattgatgatgaagatgctaacatgaattatcgggagtcacatcatacg
agcgatcaggaagagtatgcagaagaaaatgctcaagatcgcctggcagctgctggactt
gaagattcagatgccgaggatgagatgccttcctcttcggcatttcgacggagacgagcg
ttatcagaatccgatgatgatgagcaatacaggaagcagacaccgtccagtccgacgaga
gacacaactgctgagctgcaagatatcgatggaggagtaagagaagatgatgataagatg
aatggagataacggttctgaggatgattag
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integrated database retrieval system
