Mangifera indica (mango): 123200593
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Entry
123200593 CDS
T07684
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
minc03015
mRNA surveillance pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123200593
09122 Translation
03013 Nucleocytoplasmic transport
123200593
03015 mRNA surveillance pathway
123200593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123200593
03041 Spliceosome [BR:
minc03041
]
123200593
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123200593
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123200593
Spliceosome [BR:
minc03041
]
Complex C
Other components
EJC/TREX
123200593
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123200593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
123200593
NCBI-ProteinID:
XP_044471785
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All DBs
Position
17:complement(66794..73056)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRDNEYEDELLDYEEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKSHKDLLKNECPQIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaccagggacaacgagtacgaggatgaacttcttgactatgaggaagaagat
gctcaagctcctgactctgtcgctaccaaagccaatggtgaagccgccaagaagggctat
gttggaattcacagttcaggattcagggacttccttttgaagccagagcttcttcgagct
atcgtggactctggatttgagcatccatcagaagtgcaacatgaatgtatacctcaagct
attttggggatggatgtcatttgccaagctaaatctgggatgggaaagactgcagttttt
gttctttcaaccttgcagcaaactgagccaaacccgggccaagttactgcacttgtttta
tgtcataccagagagttagcttatcagatctgccatgagtttgagcgattcagtacatat
ctgcctgatatcaaggttgctgtcttttatggtggtgttaatatcaaaagtcacaaagat
ctgctgaaaaatgaatgccctcaaattgttgttggcacaccaggaagaatactagctctt
gcaagagataaagacctatcattgaagaatgtgaggcattttatccttgatgaatgtgac
aagatgcttgaatcactcgacatgagaagagatgtgcaggagatattcaagatgactcct
catgataagcaagttatgatgttttcggcaacactcagcaaagaaatccgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaggccaagttgactctt
catggtcttgtacagcactacatcaaattgagtgagctggagaagaatcggaagctgaat
gacctccttgatgcattggactttaatcaagttgtaatctttgtcaaaagtgtgagcaga
gctgcagagttgaacaagttacttgttgaatgtaattttccctctatatgcatccattct
gggatgtctcaggaagaaaggttgacacgttacaagggtttcaaggagggaaacaagagg
attcttgtggccacagatttggttggaagaggaattgacattgagcgtgtcaatattgtc
atcaattatgacatgccagattctgctgacacttatcttcacagggttggtagagctggt
aggtttggcactaagggtcttgcaattacttttgtttcctctgcatctgattccgatatt
cttaatcaggttcaagcaagatttgaggtggatataaaggaacttccagagcagattgat
acatctacatacatgccatcataa
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