Mangifera indica (mango): 123201096
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Entry
123201096 CDS
T07684
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123201096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123201096
Spliceosome [BR:
minc03041
]
Complex B
Other components
Prp19-related factors
123201096
Complex C
123201096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Nup35_RRM_2
RRM_occluded
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
123201096
NCBI-ProteinID:
XP_044472491
LinkDB
All DBs
Position
2:16697513..16701281
Genome browser
AA seq
491 aa
AA seq
DB search
MAHRFLRDHQADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARVT
EQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTRDGAEKAAEELSNKLVIKGLRLKLMWGK
PQTQRPESEGSDEARQQAVAHSGMLPRSLISQKQNQYQQPDTQDQAAPTPYFNIPPPPQQ
ERAYYPSMDPQRMGALVPSQEGENQSGPEKLQQGQHYNYPPMLPPHGQHHQHLYPPYGYM
HPMAPYQHYPSPYQSSMPQPNAPPMTQQYQHSGPPRPAPLVSATPSSGSASSTSAPSGSS
PAVSAPQASSQ
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccgatttttgagagatcaccaggccgatggttgggagcgttctgattttcct
atcatctgtgagtcatgtctcggtgacaacccttacgtgcgaatgacaaaagctgattat
gataaggagtgtaagatctgcacacgaccatttacagtttttaggtggaggcctggtcgt
gatgcaagatttaagaagactgagatttgccagacatgcagtaagttgaaaaatgtttgt
caagtatgtctcttggatctggaatatggattgcctgttcaggttcgcgacactgccctc
agtatcagttccaatgatgccattcctaagagtgatgtgaacagggagtactttgccgag
gagcatgatcgcagggctagagctggtattgactatgaatcctcatatgggaaggcacgg
ccaaatgataccatcctgaagcttcaaagaacacagccttattacaagcgcaacagagcg
cacgtatgcagtttttatgttcgtggtgaatgcacaagaggtgctgagtgcccttatagg
catgaaatgcctataacaggagagttgtcacagcaaaatattaaagatcgttattatgga
gtgaacgaccctgttgcactgaagctactcaataaggctggtgaaatgccttctctggaa
ccccctgaggatgaaagcattaaaacactttatgtgggtggagttgatgcaagggttacc
gaacaagatctgagggacaacttttatgcccatggtgaaattgaatccataaagatgcat
ccacaaaaagcatttgcttttgtgacttacacaacaagagacggtgcagagaaggctgca
gaagagctgtctaacaaactagttataaagggtctgaggctgaagctgatgtggggtaaa
ccccagacacaaagacctgaatcagaaggttcagatgaagctaggcagcaagcagtggct
catagcggaatgttgcctcgttcacttatatctcaaaaacaaaatcaatatcaacagcct
gacactcaggaccaagctgcaccaactccttacttcaatattcctcctccacctcagcag
gaaagagcctattatccatccatggatcctcaaagaatgggtgcacttgttccatcccag
gaaggtgagaaccagtcaggtccagagaagctgcaacaaggacagcattataattatcca
cccatgctgcctcctcatgggcaacatcaccaacatctttatcctccttatggatatatg
catccaatggccccatatcaacattacccttcaccatatcagtcttcaatgccccagcca
aatgcaccacctatgacacagcagtatcagcattctggtccaccaaggccggctccccta
gtgtctgcaaccccatcatcagggtctgcatcctcaacatcagctccttctgggtcttct
ccagcagtttctgcaccacaagcatcatcacagtaa
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