KEGG   Mangifera indica (mango): 123201490
Entry
123201490         CDS       T07684                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
minc  Mangifera indica (mango)
Pathway
minc03013  Nucleocytoplasmic transport
minc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:minc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123201490
  09122 Translation
   03013 Nucleocytoplasmic transport
    123201490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:minc03019]
    123201490
   03041 Spliceosome [BR:minc03041]
    123201490
Messenger RNA biogenesis [BR:minc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     123201490
Spliceosome [BR:minc03041]
 Complex C
  Other components
   EJC/TREX
    123201490
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    123201490
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C DSE1_N Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd eIF2A NBCH_WD40 Beta-prop_EIPR1 Beta-prop_EML WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Tricorn_2nd WDR90_beta-prop_4th Beta-prop_IFT80_2nd TRM82_WD PAC11 Beta-prop_WDR41 TP_0598_N Beta-prop_Nup120_160 DUF7099 WD_LRWD1 CNH
Other DBs
NCBI-GeneID: 123201490
NCBI-ProteinID: XP_044472957
LinkDB
Position
18:complement(13055862..13059085)
AA seq 314 aa
MAETIPFKNLQSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHHGKVKDI
ELKGHADSVDQLCWDPKHADLIATASGDKTVRLWDVRSGKCSQQAELSGENINITYKPDG
THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPS
LRPLDTVMAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS
FNYTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ
ADEGVFRIFGFDNA
NT seq 945 nt   +upstreamnt  +downstreamnt
atggcagaaactatacccttcaaaaatctccaaagcagggagtacacgggccacaaaaag
aaggttcactctgtggcttggaattgtacgggcacaaagcttgcatctggttcagttgat
caaacagctcgagtttggcacatcgagcctcacggtcatcatgggaaagttaaagatatt
gaattgaaggggcatgctgatagtgtggatcagttatgttgggaccctaaacatgctgat
ttaattgctactgcttcaggcgacaaaacagttcgtttgtgggatgttcgaagtggaaaa
tgctcacaacaagctgaacttagcggcgagaacatcaacataacttacaaacctgatggg
acacacattgctgttggtaatagggatgatgaactaacaatattggatgttcggaaattc
aagccaattcataggcgtaaatttggttatgaggtaaacgagattgcttggaacatgaca
ggagaaatgttctttttgactacaggaaatggtactgttgaagtgttatcatacccatct
cttcgacctcttgacactgtcatggctcatacagctggttgctattgcattgcaattgat
ccaatgggaagatactttgctgttggaagtgctgattccttagtcagcctttgggatatc
tcagagatgctctgcgtccgtacattcacaaaacttgaatggcctgtcaggactataagc
tttaattacacaggagattatattgcttctgccagtgaagatttattcatagatatatca
aatgtacacactggtcgaacggtgcatcaaattccatgtcgtgctgccatgaatagtgtg
gaatggaatcccaagtacaatctacttgcatatgctggggatgacaagaacaaatatcaa
gctgatgaaggtgtttttcgaatatttggctttgacaatgcataa

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