Mangifera indica (mango): 123202238
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Entry
123202238 CDS
T07684
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123202238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123202238
03036 Chromosome and associated proteins [BR:
minc03036
]
123202238
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123202238
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123202238
mRNA degradation factors
5'-3' decay
Decapping complex
123202238
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123202238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Dimer_Tnp_hAT
HEAT_PBS
HEAT_2
Motif
Other DBs
NCBI-GeneID:
123202238
NCBI-ProteinID:
XP_044474000
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All DBs
Position
18:complement(2285457..2289701)
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AA seq
522 aa
AA seq
DB search
MYLDERCVEIPDDDVNSGDFNVLHWWRDNQYKYKVLSQMAVDIFAIPITTVASESAFSAC
SRVIDMYRSALSLETVNMLMCGADWMRTRYNMKKQDEVVNNLSQLTASWVHSQHGQRILF
RWVAATRDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAIVILVPTLEL
ALQTSQVCKELRKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKNGVCIL
KYCSMLVMDEADKLLSPEFQPSVEQLNRFLPAKRQILMFSAIFPVTVKDFKDRCLQKPYV
INLMDELTLKGITQYYAFVEERQKVHCLNTLFSKINQSIIFCNLVNRVELLAKKITELGY
CCFYIHAKMLQDHRNRVFHDFRNGACKNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYL
HRVGRSGRFGHLGLAVNLITDEDHFNLYRIEQELGTEIKQIPPHIDQAIYCRIADAIHLE
VLSSATEEGITDLELLVKDLWLLPGMFFQVSGYSSPKYLKGL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtatctggatgaacgttgtgttgagatacctgatgatgatgttaactcaggcgacttt
aatgtgcttcactggtggagagacaatcaatataagtataaagtgctttcacaaatggca
gtcgatatctttgcaattcctattacaacagtggcttcggagagcgcatttagtgcttgt
agtagagtaattgacatgtacaggtcagctctatcgctagaaacagtcaatatgcttatg
tgtggagctgattggatgagaacacgttataatatgaagaaacaagatgaggtcgtcaat
aacttatcgcaactcactgctagctgggttcattcacaacatggccaacgcattcttttt
cgctgggttgcagctacaagggattcttcaaatttgttggcgcatgaggctgcatttgct
ttgggtcaaatgcaagatgctgaagctatccctgctttggaagcagttttgaatgatttt
tctttgcatccgattgttcgtcatgaggcaattgttatccttgttccaacactagagttg
gctcttcagacatcacaagtctgtaaggagctcagaaagcatttgaaaatccaagtcatg
gttaccacgggtggtaccagtcttaaggatgatatcatgcgattgtatcaaccagttcac
ttgcttgttggtactccaggaagaattcttgatcttgccaaaaatggtgtttgcattttg
aaatattgttcaatgcttgtaatggatgaggctgataagcttttgtcgcctgagtttcaa
ccttcagtggagcagctcaatcgttttctgcctgcaaagcgtcaaattttgatgttctca
gccatatttccagtcactgtgaaggactttaaagatagatgcctgcaaaaaccatatgtt
attaatcttatggatgagcttactctcaagggtatcactcaatattatgcttttgttgaa
gaaaggcagaaagtccactgcctaaacactcttttctctaagataaatcagtcaatcatt
ttttgcaatttggtgaatcgagttgaactgttggcaaagaaaattacagaacttggctac
tgttgtttttacattcatgcaaagatgctgcaagaccatcgcaatagagtctttcatgac
ttccgcaacggtgcatgcaagaatcttgtttgtactgacctgtttacaagaggtatagac
attcaagcggtgaatgtcgtcattaactttgattttcccaagaactctgagacatatctg
cacagagttggtcgatcaggaaggtttggacaccttgggttagctgtgaatctgattact
gacgaagaccactttaacttgtataggattgagcaagaacttggaactgaaattaagcaa
attcctccacatattgatcaggcaatatactgccggattgcagacgctatccatttggaa
gtccttagctctgcgactgaggaaggaattacggatttggaattgttggttaaagatttg
tggctgcttcctggaatgtttttccaggtgtccggatattctagccctaaatatctaaaa
ggattgtaa
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