KEGG   Mangifera indica (mango): 123202591
Entry
123202591         CDS       T07684                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
  KO
K10570  DNA excision repair protein ERCC-8
Organism
minc  Mangifera indica (mango)
Pathway
minc03420  Nucleotide excision repair
minc04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:minc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    123202591
  09124 Replication and repair
   03420 Nucleotide excision repair
    123202591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:minc04121]
    123202591
   03400 DNA repair and recombination proteins [BR:minc03400]
    123202591
Ubiquitin system [BR:minc04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     123202591
DNA repair and recombination proteins [BR:minc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      123202591
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 Beta-prop_RIG_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_EIPR1 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SPT8 WD_LRWD1 Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_Nup120_160 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_RIG_1st Beta-prop_VPS8 NARG2_C
Other DBs
NCBI-GeneID: 123202591
NCBI-ProteinID: XP_044474472
LinkDB
Position
19:10660951..10665937
AA seq 449 aa
MWKELGGREVGKIHPSSFTNRIKSNRISTLQLSNYKDIVSPHKGSINSLQVDLTEGRYLL
SSASDASVGVYDVQQPTHHEGGGVIAKHKNVFVVDKQHRQGHKYAVSSAVWYPIDTGLFI
TGSYDHYVKVWDTNATQVVRNFKLPGKVYRTAMSSLATSHMLIAVGTEDVQVRLCDIASG
AFSHTLSGHRDGIMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFHVLDQSRTQLGRRP
PLIERATMNKVSTSRSSSAGQNLSIKPKGAQRRSANGNGKQLLNGRNPVKGSVKQRLHPG
MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDLESGCNTLVNFETVRLQTSK
AIQLATSPNPALAFVPCMTAVKAFDVWTGKTCLEFRGHYEFVNCCWFSSQDQELYTGGND
RQILVWSPPKSSSDEMDLGPGQDQDSWSD
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgtggaaggaacttggaggcagagaagtgggtaaaatccacccaagttctttcacgaat
cggattaaatccaatcgaatctccactctacaactctccaattacaaagacatagtttcc
cctcataaaggctctatcaactctcttcaggttgatctgacagagggacgatatttatta
tcgagtgcatcagatgcatcagtgggtgtttatgatgttcaacagcccacacatcatgaa
ggaggtggtgttattgcaaagcacaagaatgtatttgttgtcgacaagcagcatcggcag
ggtcataagtacgccgtatcctcggccgtatggtatcctattgacaccggcctatttata
acgggatcctatgatcattatgtcaaagtatgggatactaacgctactcaggttgtcagg
aatttcaaactgcctggaaaggtttatagaactgccatgtcctcactggcaacatcccac
atgttaattgctgttggaacagaggatgttcaagttcgcctttgtgatattgcctctgga
gcattttctcacactttatcgggtcaccgtgatggcataatgacagtagaatggtctaca
tccagtgagtgggttttagtaacagggggatgtgatggtgctatacgtttttgggatatt
agacgtgctggatgttttcatgttttggatcagtcccggactcagctagggagacgtcca
cctctgatagaacgtgccactatgaataaggtttcaacatcaaggtcctcatcagcaggt
caaaatttgtctataaaaccaaagggagcacaaaggagatctgctaatggaaatggtaag
cagttactcaatggtcgaaacccagtcaagggatctgtgaaacagagattgcatccaggg
atgttgtctagtcaggatcgtgccactgctcattatggtgctgttactggtctaaaagtg
actgaagatggaatgtatctcctcagtgcagggtctgattcaagaataaggttgtgggac
ctggaatctggctgcaatacacttgtgaactttgaaactgttcgcttacaaaccagcaag
gcgatacagttagcaacatcacctaatccagctcttgcctttgttccatgcatgacagct
gttaaagcatttgatgtttggactggtaagacatgtttggaatttcgtggccactatgaa
ttcgtcaattgttgctggtttagttcccaggatcaggaactgtacactggtggcaatgat
agacaaattctagtctggtctccacccaaatctagttccgatgaaatggatttagggcct
gggcaggatcaagatagttggagcgattga

DBGET integrated database retrieval system