Mangifera indica (mango): 123202689
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Entry
123202689 CDS
T07684
Name
(RefSeq) THO complex subunit 5B-like isoform X1
KO
K13174
THO complex subunit 5
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123202689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123202689
03041 Spliceosome [BR:
minc03041
]
123202689
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
123202689
Spliceosome [BR:
minc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123202689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF7557
Motif
Other DBs
NCBI-GeneID:
123202689
NCBI-ProteinID:
XP_044474651
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All DBs
Position
19:11174062..11178492
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AA seq
815 aa
AA seq
DB search
MEDGEIEEEGMMIDGNGEDAQLTSSRKLEKSAYEMLRESKSSIEEIVAEMVAIKREKQPK
AQLRELVTQMFIHFVTLRQANRTILVEEDRVKAETERAKAPVDFRTLQLHNLMYEKSHYV
KAIKACKDFKSKYPDIELVPEEEFYRDAPEKIKSSKLSNDSSHDLMLKRLNYELHQRKEL
CKLHEKLEQHKKSLLETIANRKKFLSSLPSHLKSLKKASLPVQNQLGVLHTKKIKQHQSA
ELLPPPLYVIYSQLIAQKEAFAENIDLEIVGSLKDAQTFARQQAVKDTGITTNVENSKLE
DDVPDDDDDGQRRRKRPRRVPSKENVDQAGLYQVHPLKIFLHINDDEISNPKCAKLISLK
FEYLLKLNLVCVGIEGSHEGPAKDILCNLFPDDTGLELPHQSAKLLVGDTLVFDERRTSR
PYKWAQHLAGIDFLPEFSPLLARCETPSSETAKSDAVISGLALYRQQNRVQTVLQRIRSR
KKAQLALVEHLDSLMKLKWPALDFESVPWALHTPLCSLHGWSPVGPASNSASSLPSMDIE
QIQEHIDVNLDGRPASKEELETAREDGELPSLVPVTSVENDVKLIPSGQSSLIHSRQLAL
ISKSIISPISKARAQSFKKYDDDSELLLDIDSDVEDSAQIDADAENAASSHSYELTKKSW
VDCGVKEFCLILTRKMSGNEKILKLEAKIKVSMEYPLRPPLFALSLAEDQHDGNGYEWYN
ELRAMEGEVNLHTVKMLPPDQENHILAHQVRCLAMLFDYCLDEASPSEKRKTTSVVDVGL
CKPVDGSLLARSFRGRDRRRMISWKDMECTLGYPY
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggaggacggcgaaatagaggaggaagggatgatgatagacggtaacggagaagatgca
cagttaacatcctcacgcaagttagagaaatcggcttacgaaatgctgagagaaagcaaa
tcctcgattgaagaaatcgtcgccgagatggttgccattaaaagagagaagcaaccaaaa
gcacaactgagggaactcgtaactcaaatgtttatccatttcgtaactcttcgtcaggcg
aaccgtactatattggtagaagaagaccgtgtgaaagcagagactgaacgcgccaaggcg
ccggtggatttcaggactctacagctgcacaatttgatgtatgagaagagtcactatgtt
aaagcaattaaggcttgtaaggattttaagtctaaatatcctgatattgagctcgtgcct
gaggaagagttttatcgtgatgccccggagaagattaaaagctctaaactgtctaatgac
agctcacacgatcttatgctgaagaggcttaattacgagttgcatcagcggaaggaactg
tgcaaacttcatgagaaattagagcagcataagaaaagtttgcttgagactattgcaaac
aggaagaaattcttgtcgagcctaccttcacatctcaagtctcttaagaaagcatcctta
ccagtgcaaaaccaattaggggttttgcatacgaagaaaataaagcagcaccaatcagct
gagttacttccaccgcctctctatgtgatttactctcagcttatagctcaaaaggaagca
tttgctgaaaatattgatttagagatagtaggaagtttgaaagatgctcaaacatttgcc
cgccagcaagctgttaaggacactggcataaccacgaatgttgaaaactccaagttggag
gatgatgtacccgatgatgacgatgacggacagagaaggagaaagcgaccaaggagggtt
ccaagtaaagagaatgttgaccaggcaggactatatcaagttcatccactcaaaatcttc
cttcatataaatgatgatgagatttccaatcccaagtgtgcaaaacttatttctctgaag
tttgaatacttgttgaaattaaatcttgtatgtgttggcatagaagggtcacatgaagga
cctgcgaaagatatcttgtgcaatctatttcctgatgatactggtcttgaacttcctcac
cagtctgccaaactccttgtgggtgacactctggtgtttgatgaaagaaggacttcacgt
ccatataaatgggcccagcatttggctggaattgatttcttaccggaattctcaccattg
cttgctagatgtgaaactccaagtagtgagactgctaaaagtgacgctgttatatctggc
ctagcactgtatcgccagcagaatagagtacagacagttttgcaaagaattcgctctcga
aaaaaggctcagctggctcttgtggaacaccttgattcacttatgaagcttaaatggcct
gctttggattttgaaagtgttccatgggctttgcataccccactatgcagtttgcatggt
tggtcacctgtagggcctgcttctaattcggcctcatctttgccttccatggatatagag
caaattcaggaacatatagatgttaatttggatggaagacctgcttcaaaagaagagcta
gagactgctcgggaagatggagagctcccatctttagttccagttacatctgttgaaaac
gatgtcaaacttataccatcagggcaatctagtttaatccattccaggcagctggctcta
atatcgaagagcatcatttctcctattagtaaggcaagagcacagagtttcaaaaaatat
gatgatgattcagagttgttgcttgatatcgatagtgatgtggaagactctgcacaaatt
gatgctgatgcagaaaatgctgcttctagtcacagctatgagttgaccaaaaagtcatgg
gtggattgcggggtcaaggaattttgtctgattttaacccgaaaaatgagtggaaatgag
aagattttgaagttagaagccaagatcaaggtcagcatggagtatcctctaagacctccc
ctttttgctctgagtcttgcagaagatcaacatgacggtaatggttatgagtggtataat
gaacttcgtgccatggaaggcgaggttaatctccatactgtaaagatgttaccaccagat
caagaaaaccatatcttagctcaccaagttcgttgtcttgctatgttgtttgactattgc
ttggatgaggcatctccttctgagaagagaaagactacttctgttgttgatgttggtctg
tgtaaacctgttgatggtagtcttcttgccaggtcttttaggggaagggacaggaggaga
atgatatcctggaaggacatggaatgcactcttggttatccatactag
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