Mangifera indica (mango): 123203171
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Entry
123203171 CDS
T07684
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123203171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123203171
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123203171
Spliceosome [BR:
minc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123203171
Complex C
U5 SnRNP specific factors
123203171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
DUF1127
Motif
Other DBs
NCBI-GeneID:
123203171
NCBI-ProteinID:
XP_044475323
LinkDB
All DBs
Position
19:12347147..12355019
Genome browser
AA seq
2176 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAY
RGRPPELDEKLKKSKKKKERDPLSEPVPRQGKRRRLRQESVLTSTEEGLYQPKTKETRAA
YEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNDAVKNPDKKKDIEKLLNPIPNHVFDQL
VSIGRLITDYQDGGDAGASAANGDEALDDDMGVAVEFEENDDEEEESDLDMVQEEEEEDD
DVAEPNASAAMQMGGGIDDDDSQDTNEGMNLNVQDIDAYWLQRKISQAYEQQIDPQQCQK
LAEEVLKILAEGDDREVETNLLVHLQFEKFSLIKFLLHNRLKIVWCTRLARSEDQEERKK
IEEEMMGLGPDLVAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDGSRDRRGLV
DRDADGGWLQGQRQLLDLDNLAFEQGGLLMANKKCDLPTGSYRHLSKGYEEVHVPALKAK
PLDPNEKLIKITEMPEWAHPAFKGMTQLNRVQSRVYETALFSADNILLCAPTGAGKTNVA
VLTILQQLALNRNPDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQVYDVKVRELSGDQ
TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA
RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLGKGLFHFDNSYRPVPLSQQYIGIT
VKKPLQRFQLMNDLCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLK
EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA
TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDLYGEGIIITGH
SELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNP
LLYGLSPEVLKEDITLGERRADLIHSAATILDKNNLIKYDRKSGYFQVTDLGRIASYYYI
THGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESLE
EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKALN
LSKMVTKRMWNVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPAELGELIRYSKMGRT
LHRFVHQFPKLNLAAHVQPITRSVLRVELTITPDFQWDDKVHGYVEPFWVIVEDNDGEYI
LHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPE
KYPPPTELLDLQPLPVTALRNPAYENLYKDFKHFNPVQTQVFTVLYNTDDNVLVAAPTGS
GKTICAEFAILRNHQKASDSVMRAVYIAPIAALAKERFRDWEEKFGHHLGMRVVELTGET
AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQISLFIVDELHLIGGQGGPVLEVIVS
RMRYIASQVENKIRLVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI
ANFDARMQAMTKPTYTAIVQHAKNGKPALVFVPSRKYVRLTAVDLMTYSSMDGDQNSAFL
LRSHENFEEYLSGISEEMLRATLRHGVGYLHEGLSSYDQEVVSELFKGGFIQVCVMSSSL
CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR
KEYYKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLTQNPNY
YNVQGVSHRHLSDHLSELVENTLSDLESSKCIIIEDEMDLSPSNHGMIASYYYISYTTIE
RFSTSLTPKTRMKGLLEILASASEYAQLPIRPGEEEVVRRLINHQRFSFENPRCTDPHVK
ANALLQAHFSRQSVGGNLALDQREVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVT
QGMWERDSMLLQLPHFTKDLAKKCQENPGKSIDTVFDLVEMEDDERRELLQMSDSQLTDI
ARFCNRFPNIDMSYDVQDGDNVRAGDDITLQVTLERDVEGRTEVGPVDAPRYPKAKEEGW
WLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGRKSYTLYFMCDSYMGCDQEYSFA
VDVKEAGSPDEDGGQE
NT seq
6531 nt
NT seq
+upstream
nt +downstream
nt
atggcacatctgggaggtggtgcggaagcacacgcccgattcaaacagtatgagtataga
gcaaactcgagtcttgttctaacgacggattcacggccacgtgatactcacgagccgaca
ggcgagcctgagtccctctggggtaagattgaccccagaagctttggtgaccgtgcttac
aggggcagaccccctgagttggatgagaaattaaagaagtctaagaagaagaaggagcgt
gatccactttctgaacctgttccacgacagggcaagagacgtcgtcttcgacaagagagt
gttcttacttccactgaggaagggctttaccagcccaagactaaggaaaccagagctgcc
tatgaggctatgctcagtgtcattcaacaacaattgggtggtcagcctcttaatattgtt
agtgctgctgctgatgagattttggctgttcttaaaaatgatgctgttaaaaaccctgat
aagaagaaggatattgagaagttgttgaaccccataccaaatcatgtctttgatcagctt
gtctccattggaaggcttattactgattatcaagatgggggtgatgccggggcttctgct
gctaatggcgatgaggcgcttgatgatgatatgggcgtagctgttgaatttgaagagaat
gatgatgaagaggaagagagtgatctggatatggttcaggaggaagaagaggaggatgat
gatgtggctgagcccaatgcttctgcagctatgcaaatgggtggtgggattgacgatgat
gactcacaggataccaatgagggcatgaatcttaatgtccaggatatagatgcttattgg
cttcaaaggaaaatctctcaagcttatgagcaacaaattgacccacagcagtgtcagaag
ctcgcagaagaggttctgaagatacttgctgagggagatgaccgtgaagttgagactaat
ctactggtgcatcttcagtttgagaaattcagcctcattaagtttttgttgcataatcgt
ctgaagattgtgtggtgcactcgtttggcgaggtctgaagaccaagaggagaggaagaag
attgaggaggaaatgatgggtttgggccctgatttggttgcaattttggagcagttgcat
gcaacaagggcaactgccaaggaaaggcagaagaatctggagaagagtattagagaagag
gctcgcaggctgaaggatgagagtggtggagatggtagcagggataggaggggtcttgtt
gatagagatgcagatggtggctggttgcagggtcagcgccagctactggatctagacaac
cttgcttttgaacagggtggtcttttgatggcaaataaaaagtgtgatcttcctacaggg
tcatatagacatcttagcaagggttatgaagaagttcatgtgccagcattgaaagcaaaa
ccgctggatcccaatgagaagttgataaagataactgaaatgccggagtgggcacatcca
gctttcaaaggaatgacacagttgaacagggtgcagagtagagtgtatgagactgccctt
ttttcagcggataatatacttttgtgtgctcctactggggctgggaaaactaatgttgct
gtgcttaccatacttcagcagttagcattgaatcggaacccagatggttcattcaaccat
agcaactataagattgtctatgtggcaccaatgaaagctcttgtcgctgaagttgtcggt
aatctttctaatcgtttgcaggtatatgatgtcaaggtgagggagctaagtggagaccag
actctcactcgacaacaaattgaagaaacacaaataattgtgaccactcctgagaagtgg
gatatcattaccagaaaatcaggggatcgaacgtacacacaacttgtgaaactgctgatc
attgatgaaattcatttgcttcatgataatagagggcctgtgcttgaaagtattgttgct
agaactgttaggcaaattgaaactaccaaagagcatattcggttggttgggttgtcagct
acactccccaattatgaagatgtggctttatttttacgagtggatttgggaaaagggttg
ttccacttcgacaatagttatagacctgtccctctttctcaacagtatattgggatcaca
gtcaagaagccactgcaaaggttccagttgatgaatgatttgtgttatgaaaaggttatg
gcagttgctggaaagcatcaagttcttatttttgttcactccaggaaggaaacagcaaaa
acagctcgtgcaatacgtgataccgcacttgagaatgatacccttggtagattcttgaag
gaggacagtgtcagccgggagattctccaaagtcacacagatatggtcaagagcaatgat
cttaaagaccttttgccttatggttttgcaattcatcatgctgggatgactaggggtgac
cgtcaacttgttgaggatcttttcggtgatggacatgtgcaggtgttggtttctactgca
actctggcttggggggtgaatttgcctgctcatacggtaatcattaagggaacccagatt
tacaatccagagaaaggagcatggactgaacttagtcctctggatattatgcagatgctt
ggtcgtgctggaaggcctcagtatgatttgtatggggaagggattatcattactggtcat
agtgaacttcaatattatctttctttgatgaatcagcagcttcctatcgaaagtcagttt
gtgtccaaactagccgatcagctaaatgctgaaattgttcttgggactgtacaaaatgct
aaagaagcctgcaattggattggatacacttacctctacattcgtatgttacgaaatcct
ttgctttatggtttatcgcctgaggttctgaaagaagatataacattgggggagagaaga
gctgatttgattcattctgctgccactatcttggacaaaaataacttgatcaagtatgat
aggaaaagcggatatttccaggttacggacttgggtcgcattgcaagctattactatata
actcatggaacaatatctacatataatgagcatttgaagccaacaatgggtgatattgag
ctttgccggctattttctctaagtgaagaattcaaatatgttacagttaggcaagatgaa
aaaatggagctggctaagctgttggaccgtgttcccattccgataaaggaaagcctggaa
gagcctagtgccaagattaatgttttgctacaggcatacatttctcagctaaagcttgaa
gggctttcattgacttctgacatggtgttcataactcagagtgctggacgtcttatgaga
gctcttttcgagattgtattgaaacgaggttgggcacaattagcagagaaagctttgaac
ttgagcaaaatggttactaaacggatgtggaatgtccaaacacctcttcggcagttcaat
ggaatcccaaatgagatattaatgaagttggagaagaaagatttcgcatgggaaaggtat
tatgatctctcacctgctgagcttggggagctcatacggtactcaaagatgggcagaact
cttcacagatttgttcaccaattcccaaaattaaaccttgctgcacatgttcagccaata
actcgctctgttttaagggtcgaacttacaataacgcctgacttccagtgggatgacaag
gtgcatggatatgtggagcctttttgggtaattgtggaggataatgatggtgaatacatt
cttcatcatgagtattttatgcttaagaagcagtacatagacgaggaccacacactgaat
ttcactgtgcctatatatgaaccattgccaccgcagtattttatacgtgttgtgtcagat
aagtggctaggttcacaaacggttttacctgtctctttcaggcaccttattttgccagag
aagtatcctccacctacagagctcttggacttacaacctctccccgtgacagcattgcgc
aatccagcatatgaaaacctttataaggattttaagcattttaaccccgtccagactcag
gtctttactgtgttgtataatacagacgataatgtcttagttgctgcacctacagggagc
gggaagaccatatgtgcagagtttgccattttaagaaatcatcaaaaagcatctgatagt
gtcatgcgtgctgtatatatagcaccgattgcagctcttgctaaagaacgcttccgtgat
tgggaggagaagtttggtcaccatcttggaatgcgggttgttgagttaactggggaaaca
gcaatggatctgaaactgcttgagaaagggcagataattattagtactccagagaaatgg
gatgctttatcccgccgctggaagcagaggaagtatgtgcagcagattagtcttttcatt
gttgatgagctccacctgattgggggtcaaggtggtcctgtcttggaggtgattgtttct
cgaatgagatatattgccagccaggttgaaaacaagatccgtcttgtggctttgtctact
tctcttgcaaatgccaaggatcttggagaatggataggggctacctctcatggccttttc
aattttcctcctggggttcgtcctgtgcctctggaaatacatattcagggagtggatata
gccaactttgatgcaaggatgcaagctatgacaaaacccacatacactgcaattgtccaa
catgccaagaatggaaagcctgcacttgtatttgtcccttcaagaaagtatgtccgactc
actgctgtggatctgatgacatattcaagtatggatggtgatcagaattcagcttttctg
ttgcggtcccatgaaaactttgaggaatatcttagtggtatcagtgaagagatgttgaga
gccactttacgtcatggagtggggtacttgcatgagggtttaagcagttatgatcaagaa
gttgtttcagagctattcaaaggtggattcattcaggtttgtgttatgagtagttctctc
tgctggggagtgccattgacggcacatttggtggttgtgatgggaacacaatattatgat
gggcaggaaaatgctcatacagactatcctgttacagatctattgcagatgatgggtcat
gccagtcgacctctgcttgataattctgggaaatgtgtcatcctatgtcatgcccctcgt
aaagaatactacaagaagttcttgtatgaagcttttcctgttgaaagtcatttgcatcat
ttcctacacgataatttcaatgcagaagttgttgcgggagttattgagaacaagcaagat
gctgtggattatctcacttggacgtttatgtacaggaggctcactcaaaatccaaactac
tacaatgtccagggtgtaagtcacaggcatctctctgatcacctctcggagctggttgaa
aacacattaagtgatctggaatcaagcaagtgcatcattatagaagatgaaatggacctt
tctccttcgaatcatggcatgattgcatcttactattatatcagttatactactattgaa
cggttcagtacttctttgactccgaagacaaggatgaagggtcttctggagattcttgct
tcagcttcagagtatgcacaactacctatacgtcctggggaggaagaggttgttcgcagg
ttaattaatcatcagagattttcatttgagaatccaagatgcactgatccacatgttaag
gcaaacgctcttcttcaagcacacttttctaggcaatcagtgggtgggaaccttgcattg
gaccagcgggaggtactcctttctgctagtcgattgcttcaggctatggttgatgttatt
tcaagtaatggttggttgagccttgcacttctggcaatggaagtaagtcaaatggtgact
cagggcatgtgggaacgtgattccatgcttcttcagctcccgcatttcacaaaagatttg
gcaaagaagtgccaagagaatcctggaaagagcatagacacagtgtttgatttggtggag
atggaggatgatgagaggcgtgagctcctgcagatgtccgattcacagttaaccgatatt
gcaaggttttgcaatcgtttccccaacatagacatgtcttatgacgtacaggatggtgat
aatgtaagggctggggatgacatcacattgcaagtcacccttgagcgagatgtggagggg
aggacggaggtgggacctgttgatgctcccagatatcctaaagccaaagaagaaggctgg
tggcttgttgttggtgacaccaagactaaccagttgcttgccattaagagggtgtcactc
caaaggaagtcaagggtcaagcttgatttcgctgctcctgcagaagctggaaggaaatca
tatactctgtattttatgtgtgattcatatatgggctgtgaccaagaatatagtttcgct
gttgatgtcaaagaagcaggcagccctgatgaggatggtggacaagaatga
DBGET
integrated database retrieval system
