Mangifera indica (mango): 123203384
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Entry
123203384 CDS
T07684
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
minc
Mangifera indica (mango)
Pathway
minc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123203384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123203384
03019 Messenger RNA biogenesis [BR:
minc03019
]
123203384
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123203384
RNA polymerase I system
123203384
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
123203384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW
KOW6_SPT51-2
KOW4_SPT5
KOW2_Spt5
Spt5-NGN
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
ProQ_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
123203384
NCBI-ProteinID:
XP_044475670
LinkDB
All DBs
Position
19:complement(7015329..7026114)
Genome browser
AA seq
1058 aa
AA seq
DB search
MPRRREEDEDDVDDEYDDEQALDDLEDEEEEDDRSNKKRRRSEFIDDVAEEDEDEEDYDD
DDEDYVGGRKPKAKRRTGSEFFDLEAQVDSDEDEEEEEGEDDFIVDGGADLPDDVDGRGI
HRRPLLPREDEAEDVEDLERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKC
AIGREREAAVCLMQKFIDKGAELQIRSAIALDHLKNYIYVEADKEAHVKEACKGLRNIYS
QKVMLVPIREMTDVLSVESKAIDLSRDTWVRMKLGSYKGDLAKVVDVDNVRQRVTVKLIP
RIDLQALANKLEGRDAPKKKAFVPPPRFMNVDEARELHIRVERRRDPITGDYFENIGGML
FKDGFLYKTMSTKSISAANIKPTFDELEKFQTPGENGESDIASLSTLFANRKKGHFMKGD
AVIVIKGDLKNLKGWVEKVDEENVHIRPEMRGLPKTLALNQKELCKYFEPGNHVKVVSGT
QEGATGMVVKVEQHVLIIVSDTTKEHIRVFADDVVESSEVTTGVTKIGDFELHDLVLLDN
NSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKYKIEKKSNVQDKNKNTVSVKDVVRI
LEGPCKGKQGPVEHIFRGVLFIYDRHHLEHAGFICAKASSCTIVGGSRGNGDRNVDAFRF
NNHRPPPRVPQSPRRFPRGGHQNDYGGRHRGGRGGHDPLIGTTVKIRQGPFKGYRGRVVE
IKGQSVRVELESQMKIVTGKFLLNDLISFSCFSVWTINNLLFAVDRSYISDNVVVSTPYR
DAPRYVMGSETPMHPSRTPLHPYNTPMRDAAATPIHDGMRTPMRDRAWNPYTPMSPPRDI
WEEGNPASWGTSPQYQPGSPPSRPYEAPTPGSGWANTPGGNYSEAGTPRDNSSAYANAPS
PYLPSTPGGQPMTPNSAFYLPGTPGGQPMTPGTGGPDAMSPVIGSDNEGPWLMPDILVNV
RKLGEDSGMGVIREVLPDGSCRVVLGSSGNGDTISALPTEIEIVVPRKNDKIKIMGGALR
GATGKLIGVDGTDGIVKVDDTLDVKILDMVILAKLALP
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtcgaagagaggaagacgaagacgatgtggatgacgagtatgatgacgagcag
gccttggacgacttggaagacgaagaggaggaagacgatcgttccaataagaaacgcagg
agatctgaattcattgatgacgtggctgaggaggacgaggacgaggaagattatgacgat
gatgatgaagattacgtcggtgggagaaagcctaaggccaagagacggactgggtcggag
tttttcgatctggaggctcaagttgatagtgacgaagacgaggaggaagaagaaggagag
gacgacttcatagttgatggtggagctgacctacctgatgatgttgatggtcgagggatt
catcgtcgtccactgctgcctcgggaggatgaggcagaagatgttgaagatcttgagaga
agaattcaggcaagatatgcgaggtcaagccatacggaatatgacgaggaaaccacagat
gtggagcagcaagcacttttgccatctgttagggatccaaagctttggatggttaaatgt
gcgattggccgtgaacgagaggctgctgtctgtctaatgcaaaagtttatagataaagga
gctgagctgcaaattaggtctgctattgcacttgatcacctgaaaaactacatatatgtt
gaagcagataaagaagcccatgtgaaggaggcatgcaaaggtctgcgaaatatatattcc
cagaaagtaatgctcgttcctataagagaaatgactgatgttctttcagttgaaagcaaa
gcaattgatctttctagggatacttgggtcagaatgaagcttggaagttacaagggagac
cttgccaaagttgttgatgtggacaatgttcgacagcgagtaacagtgaaattaattcca
agaatagatttgcaagctcttgcaaataagttggaaggtagagatgctccaaagaaaaag
gcatttgtccctcctccacgttttatgaatgttgatgaagctagggaattgcatatacgc
gtagagcgtagacgagatccaatcactggtgattattttgagaatattggtggcatgctg
ttcaaagatggatttttgtacaaaacaatgtcaacaaaatccattagtgcagcgaacata
aaaccaacttttgatgaacttgaaaaatttcaaacacctggagagaatggagaaagtgat
atagctagtctttcaactttatttgcaaacagaaaaaaagggcattttatgaagggtgat
gcagttattgtcatcaagggagatctaaaaaatttgaaaggatgggttgagaaggttgat
gaagaaaatgtgcatatcagaccagaaatgagaggacttcctaaaactcttgctctcaat
caaaaagaactatgcaagtattttgaacctgggaatcatgtaaaagttgtctcggggacg
caggaaggtgctactggcatggttgtaaaggttgaacagcatgttctgataattgtgtct
gataccaccaaggaacatatccgtgtatttgccgatgatgttgtggagagctctgaggtt
actactggtgtaacgaaaattggggactttgagcttcatgaccttgtgctattggataac
aatagcttcggtgttatcatacgtgtggaaagtgaagcgtttcaggttttgaagggagtt
cctgatagaccagaggttgctcttgttaaattgagagaaataaaatacaagattgaaaag
aaatctaacgtgcaagataagaataagaatactgtctcagtgaaagatgttgttaggatt
cttgagggtccatgcaaaggcaagcaaggtcctgtagaacacatatttagaggagttctg
ttcatctatgatcgacatcatcttgaacatgctggctttatatgtgctaaagccagttct
tgtactattgtgggtggatcacgtggcaatggtgatagaaatgttgatgcctttagattt
aataatcatagacctccacctcgtgtgccccagtctccaaggaggtttcctagaggaggc
catcaaaatgattatggaggaaggcatagaggtggaagaggagggcatgatcctcttatt
ggaactacggtaaaaattcgccaaggtcctttcaagggctaccgtggtcgggttgtggaa
attaagggacaatcagttcgtgttgagttggagtcacaaatgaagattgttacaggcaag
tttctgctaaatgatctcatttctttttcctgcttctctgtatggacaattaacaactta
ttatttgcagttgatcggagttatatctctgacaatgtggttgtttcaacaccgtaccgt
gatgctcctcgttatgttatgggaagtgaaactccaatgcatccttcgcgaactccactg
catccatacaatactccaatgagagatgctgcagcaacaccaattcatgatggcatgagg
acaccaatgcgtgaccgggcatggaatccttatacaccaatgagtccaccaagggatatt
tgggaggagggaaaccctgcttcctggggaaccagtccacagtatcagccaggaagtcca
ccttcacgtccttatgaagcacctacacctggctcaggctgggccaatactccgggtggc
aactatagtgaagctggaacaccaagagataacagttctgcttatgccaatgctccaagt
ccttacctgccatcaactccaggtgggcagcctatgacgccaaactcagccttctatctt
cctggaactcctggagggcagccaatgaccccaggaactggtggtccggatgctatgtct
cctgttataggatcagacaatgaaggaccgtggttaatgccagacatcttggttaatgta
cgtaagttgggggaggattctggcatgggagttatacgagaagtgcttccggacggatct
tgtagagtggtgcttgggtcaagtggtaatggtgatacaatatcagcccttcccacagaa
atagaaatagttgtgccgaggaaaaacgacaagatcaagatcatgggtggtgcactgcgt
ggtgccactgggaaattaattggtgtggacggtacagatggaattgttaaagtagatgac
acactggatgttaagatattagacatggttatattagcaaaattagccctgccataa
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