Mangifera indica (mango): 123204821
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Entry
123204821 CDS
T07684
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123204821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123204821
03041 Spliceosome [BR:
minc03041
]
123204821
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123204821
Spliceosome [BR:
minc03041
]
Complex B
Other components
Prp19-related factors
123204821
Complex C
123204821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
NRDE-2
ARM_TT21
ARM_TT21_C
UTP6_C
Motif
Other DBs
NCBI-GeneID:
123204821
NCBI-ProteinID:
XP_044477558
LinkDB
All DBs
Position
20:complement(8438443..8445212)
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AA seq
920 aa
AA seq
DB search
MTISKELYPSQDDLLFEEELLRNPFSLKLWWRYLIARLESPFKKRFVIYERALKALPGSY
KLWHAYLRERLNIVNNLPITHPQYETLNNTFERALVTMHKMPRIWIMYLETLTKQKLITK
TRRTFDRALCALPVTQHDRIWEIYLRFVEHRGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSSLWQEAAERLASVLNDDQFFSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLFEKARDIFEEGMSTVVTVRDFSVIFDAYSQFEESMV
AHKMETMEPSDEEEEDGGEENGFEEDEDVRLDVNLSIAKLEKKILHGFWLHDDKDVDLRL
ARLENLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTIDPMKAV
GKPHTLWVAFAKLYESHKDVANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFRG
ALDLMRRATAEPSVEVKQRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAVYE
RILDLRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRY
GKTKLERARELFDNAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYHEATKAVPNHEK
LGMYEIYIARAAEIFGVPKTREIYEQAIESDLPDKDVKNMCLKYAELEKSLGEIDRARAI
YVFASQFADPRSDSDFWNRWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQ
KDQRLTLDDAKDKLKQAGVPEDEMAALERQLAPATNNTTAKDSSRKVGFVSAGVESQPDG
GIKASANHEDIELPDESDSEDEEKVEIAQKNVPSAVFGSLGRKREESEKGEDRDDGVAVT
DNDGKNHLGALERIKRQKKV
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgacaatttcgaaggaattatacccttcacaagatgacctcttgtttgaagaagagctc
ttgcgaaatccctttagtcttaagctctggtggcgctatttgattgcgagacttgagtcc
cctttcaagaagcgttttgttatttatgaacgagctctaaaagcgttgcctggaagctac
aagctttggcatgcctatttacgtgagcgccttaacattgtgaataacttacccataact
cacccacagtatgaaacccttaataatacatttgagagagccctggtgactatgcacaaa
atgcctagaatttggattatgtatctggagactctgaccaagcagaagttgattactaaa
actcgtagaacatttgatagggcactgtgtgcgttgcctgtgacacagcatgataggatc
tgggaaatatacttgcggtttgtggagcatagaggaattcctatagaaacttctcttagg
gtttataggaggtacttgaagtatgatccatcccacattgaggactttattgagtttttg
gtgaactcaagtctttggcaagaggctgctgagagattagcttcagtgttgaatgatgat
cagttcttttcgataaaggggaaaacaaagcataggttatggttagaattgtgtgatttg
ttaaccagacatgcaactgaggtttcagggcttaatgtggatgctataattaggggtggg
attaggaagttcactgatgaggttgggaggttgtggacttcattggccgattattatatt
aggagaaatttatttgagaaggcaagagatatctttgaggaagggatgtcaacggttgtt
actgtgcgggattttagtgtgatttttgatgcatactcacagtttgaggagagtatggtt
gctcataagatggaaactatggagccaagtgatgaagaggaagaagatggtggtgaggag
aatggttttgaggaagatgaagatgttcgattggatgtgaatttatcaattgctaagctt
gagaagaagattcttcatggcttttggttgcatgatgacaaggatgtagatttaaggttg
gctcggttggagaatctgatgaacaggaggccagaattggctaatagtgtcctcttaagg
caaaatccacataatgttgaacagtggcatagaagggtcaagatatttgagggtaatccc
accaagcaaattttaacatatacagaggcagtgaggaccattgatcctatgaaagctgtg
ggaaagcctcacactctttgggttgcatttgctaagttatatgagagccacaaggatgtt
gccaatgctagagttatttttgataaagcagttcaagtaaactacaagactgtagatcac
ctggccagtgtttggtgtgagtgggcagaaatggagttgaggcataaaaatttcagagga
gcactggaccttatgaggcgggccacagcagagccatcagttgaagttaaacaaagagtg
gctgctgatggaaatgaacctgtgcagatgaagttgcataaatcattgagactttggacc
ttttatgtggatttggaagagagtttgggtaccttggaatccactcgggctgtttatgag
cggattttggatttaagaattgccacacctcagattatcataaattatgcactgcttctg
gaagagcataaatactttgaagatgcattcaaagtatatgaaagaggggtcaaaattttt
aagtatcctcatgtaaaagatatctgggtcacatacctttcaaagtttgtaaagagatat
gggaagacaaaacttgaaagggcaagagaattatttgacaatgctgttgaaacggcccct
gcagatgcagttaaaccattatatcttcaatatgcaaaactggaggaggattatggtcta
gcaaagcgagctatgaaagtctatcatgaggctaccaaggcagttccaaaccacgagaaa
ttgggcatgtatgaaatatatattgcacgggcagctgagatatttggtgtaccaaaaaca
agggaaatttatgagcaagctatagagtctgatcttccagacaaagatgtgaagaatatg
tgtttgaagtatgcagaacttgaaaagagcttgggagaaattgatcgtgctcgtgctata
tatgtatttgcatctcagtttgctgatccacggtctgattctgacttctggaatagatgg
catgaatttgaggtgcaacatggaaatgaagataccttccgagaaatgctacgaattaaa
cggagtgtttctgccagctatagccagacgcacttcattctcccagagtatctcatgcag
aaagatcagcgactgacactagatgatgccaaggacaaactgaaacaggctggtgtcccc
gaagatgaaatggcagccttggaaaggcaattagcacctgcgacaaacaacaccactgcc
aaagatagcagcagaaaagtggggtttgtcagtgctggagtggagtctcagcctgatgga
ggaataaaagcctcagcaaatcatgaagacattgagcttcctgatgaaagtgattcagaa
gatgaagaaaaagtagaaattgcacaaaagaatgttccatctgcagtttttggaagtcta
ggcagaaagagagaagagagcgaaaaaggtgaggacagggatgatggagttgctgttaca
gataatgatggcaagaaccatctcggtgccctggagagaataaagaggcagaagaaagtt
tga
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