Mangifera indica (mango): 123205263
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Entry
123205263 CDS
T07684
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123205263
03036 Chromosome and associated proteins [BR:
minc03036
]
123205263
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
123205263
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123205263
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
123205263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
UvrD-helicase
ResIII
ATPase_2
AAA_16
AAA_22
PhoH
SLFN-g3_helicase
NAT10_TcmA_helicase
DEAD
Terminase_6N
AAA
nSTAND_NTPase5
DAP3
AAA_24
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
123205263
NCBI-ProteinID:
XP_044478120
LinkDB
All DBs
Position
2:20551407..20556256
Genome browser
AA seq
875 aa
AA seq
DB search
MSKVNRDSWDDECSVIGDKGEIGFIDFEDDQSVLSYDADGEGPVIISIPFQFIQGKPQSI
LIGETSRCSITIRNSTSDPIDIWGIKIFCSNPADSFTLSLMEPLSASENTRGFLEGFSIE
DRVLQPLQTLTIWLSCKPKDVGLHTTVVHFDIGDDRIERVVFLLAEDKISQSLASNKPYA
RQPRKKQFAVNQYVVSSRPARATKQGFKSRLPEYPIPKDVRELLMNKQVPEVIAQSLVGK
NYVDFFNTLLIMEELYLEEQMQAHNMESVRMRRKGAQFLALEVPGLAERRPSLVHGDYVF
VKLSAGSSCDEIVYQGYIHRVEADEVLLNFAQEVHASHRNESLYDVKFSYNRITMRRLYQ
AVEAAENLESDLLFPENSTKRRLVKANPFVPFTSLNEEQMRSVEIILGCKGAPPYVIYGP
PGTGKTMTLVEAILQVYATKKNGRILICAASNSAADHILERLLGNETIKVKETEIFRLNA
TSRDYEDISPDYIRFCYFEESVFKCPPLQALNRYRIIISTYMSSALLTAEGIRRGHFSHI
FLDEAGQASEPESMIPIANLCRRETVVVLAGDPKQLGPVIYSKDAEVSGLGKSYLQRLFE
CEFYHNEDEGYVKKLVRNYRCHPAILDLPSKLFYRGDLLACKEDTSSSISAKVDFLPNKE
FPILFFGIQGCDEREGNNPSWFNRFEASKVVDIINKLRESTSLCEADIGVITPYRQQVLK
IRKVLETWDMPDVRVGSVEQFQGQEKEVIIVSTVRSTVKHNQFDRTYCLGFLSNPRRFNV
AITRAKSLLIIIGNPHIVCQDPYWDKLLWYCCDNNSYQGCPLPERPNYADDMLIPEVNLN
NEFETGEWGQSYKAEEIPEIPQPVTDEAEWSDGWK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagtcaatagagatagttgggatgatgaatgctctgtcataggagataaagga
gagatcggatttattgattttgaggatgatcaatcagtcttaagttatgatgcagatgga
gagggtccagttattatatccattccatttcaatttattcaagggaaacctcaatctatt
ttaataggagaaacttcaaggtgttcaataactataaggaacagtactagtgaccctata
gatatttggggaattaaaatattttgctccaatcctgcagactcttttaccttatctctt
atggaaccattgtcggcctcagaaaatactcgaggctttttggagggattttctatcgag
gacagagtgcttcaacctcttcagactttaacaatttggttatcctgcaaacccaaggat
gtgggtttgcacacaactgtggtgcactttgatataggagatgataggatcgaacgtgtg
gtatttctattggcagaagacaaaatctctcaatctctggcttctaataaaccatatgca
agacaacctagaaagaagcaatttgctgttaatcaatatgttgtctcctcacgtccagct
agggcaacgaagcaaggtttcaagtctaggctcccagaatatccaatcccaaaggatgtt
cgagagttgctgatgaataagcaagtccctgaagtcatagcacaaagtttagtggggaag
aactatgttgatttcttcaatacattgctgatcatggaagagctatatttggaggaacaa
atgcaggcccataatatggagtctgtaagaatgaggagaaaaggggctcaattcctggct
cttgaagtccctgggttggctgagaggaggccttcacttgtacatggagattatgttttt
gtgaagctttctgctggcagctcatgtgatgaaatcgtgtatcagggttacatccaccgt
gttgaagctgatgaagtgcttctgaattttgcgcaagaagtccatgctagtcacagaaat
gagagtttatacgatgtcaagttctcatataataggataaccatgaggaggttgtatcaa
gctgttgaagctgcagaaaatttagaatctgatcttctctttccagaaaattcaaccaaa
aggagattggttaaagctaatccttttgtgccatttacaagtctgaatgaagagcagatg
cgttctgttgaaataattcttggttgcaaaggtgctcctccgtatgtaatttacgggcct
cctggtacgggcaaaactatgactttggtggaagcaatcttgcaagtttatgccacaaaa
aagaatggtcggattcttatatgtgcggcttcaaacagcgctgcagatcatatattagag
aggctcttgggtaatgagacgattaaagtgaaagagactgagatatttaggcttaatgct
acaagccgtgattacgaggatatttctcctgattatattcgcttttgctattttgaggaa
tccgttttcaaatgtcctccgcttcaggcattgaaccgttacaggatcatcatttctact
tacatgagttcagctctacttactgcagaaggtatcaggcgaggtcatttttctcatatc
ttcttagatgaggctggccaagcttcagagccagaaagcatgattcctatagccaacctt
tgtcgtagagaaacagttgttgttcttgcaggagatccaaagcaactaggtcctgtcata
tattctaaagatgctgaggtttctggattaggaaaatcttatcttcaaaggctttttgag
tgtgagttttaccataatgaggatgaaggttatgtgaaaaagttagtgagaaattatcgg
tgtcatccagcgattctagacctcccatcaaagcttttctataggggagacttacttgca
tgtaaagaagatacctcttcctccattagcgctaaggtggacttccttcctaataaagaa
tttcctatactgttctttggcattcaaggctgtgatgagagagaaggtaacaatccgtct
tggtttaaccgatttgaggctagcaaggttgttgatatcatcaataagctgagagaaagt
actagtctctgtgaagcagatattggggttataacaccgtatcgccagcaggttctcaag
atcagaaaagtacttgaaacttgggacatgccagatgttagagttgggagtgttgaacaa
tttcagggacaagagaaagaggttattattgtatcgactgtcaggtcaacagttaaacac
aatcagtttgacagaacttactgtctaggatttcttagcaatccaaggagattcaatgtt
gcaattacccgtgccaaatcactgcttatcattatcgggaatccacacatagtctgtcag
gatccatactgggacaaacttttatggtattgttgtgacaataactcttatcaaggctgc
cctcttcccgaacgaccaaactatgcagatgatatgctgataccagaagtgaacttaaat
aatgaatttgaaacaggggaatggggccaatcatataaagcagaagagataccagaaatt
ccacagccggtaactgatgaagccgagtggtcagatggttggaagtaa
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