Mangifera indica (mango): 123208311
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Entry
123208311 CDS
T07684
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
minc
Mangifera indica (mango)
Pathway
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123208311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123208311
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
123208311
mRNA cycle factors
Common to processing body (P body) and stress granule
123208311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
123208311
NCBI-ProteinID:
XP_044481676
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All DBs
Position
2:13585969..13591807
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AA seq
980 aa
AA seq
DB search
MMIVQMDKVSAPSSRERVQRLYEKNIELENKRRKSAQARVPSDPNAWQQMRENYETIILE
DYAFSEQHNIEFALWQLHYKRIEELRAHYSAAISATRSNTCQGVKVPAKPDRVSKIRLQF
KTFLSEATGFYHELILKIRAKYGLPLGHISEDSENQITMDKDGKKLAEVKKGLVSCHRCL
IYLGDLARYKGLYGEGDSKSREYATASSYYLQSASLVPSSGNPHHQLAILASYSGDELVV
VYRYFRSLAVDTPCTTARDNLIVLFEKNRQIYSQMSGDVKLSTAKEHQRKGRGKGEAKLA
SRDTDIEASSVKEIVPSVQEMLKSFCTRFVRLNGILFTRTSLETFAEVLAFVSSGLCELL
SSGPGEELSFGLDAAENALFIVRFISILVFTVHNLKKETENQTYAEIVQRAVLLQNAFTA
VFELMGHVIERCIQLRDPSSSYLLPGLLVFVEWLACCPEIAAGSDGNEKLATVRTNFWNQ
CISFLNKILSLGPMSMDDDEDITCFFNMSRYDEGETENRLALWEDFELRGFSPLLPAHTI
LDFSRKHSFGGDINKERKARLKRILAAGKALTNVVTVDQKTVCFDSRVKKFLIGVEPSDD
VTFSSYPDVSNSNDIVQENQTEKEIDLAVVQPNLELYMDGEEEDEVIVFKPAVTEKRADA
IGSNWMSFDGLKPAHNASASDLQLHGGPVSAPINKLYQASTFDNSSQVPVSVASILPQQL
QPFQLHASNWLMKEEASLANSLKGLRVSENEHVVKHDLQENIGVSFPDFGLVPIQQSVNA
STSSLAYSHLKEPEAMIPPKIDAVAGVTFDSLAVKATSALPAGQRKNPVSRPVRHLGPPP
GFSPVPSKQVTAPISASYLTSENPLIDDYSWLDGYRLPPSTRGLGISTNYPSHANPQYIG
NSNGVTGTVSFPFPGKQAPAMQQLQFEKQKGWQDFQTFDHLKLQHEQQLQQQQLGNGNQQ
FAPLPEQYQGQSIWAGRYFV
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtgcagatggataaagtgtccgctccttcatcaagggagcgtgtgcagcgt
ctctatgaaaagaacattgagttggaaaataagcggcggaagtcagctcaggcacgcgtt
ccttctgatcccaatgcatggcaacaaatgcgtgagaattatgaaacaataattcttgag
gactatgccttctctgagcagcacaatatcgaatttgcattgtggcagttacattacaag
aggattgaggagctgagagcacattatagtgctgctatatctgccactagatcaaacaca
tgtcagggtgtgaaagtgcctgcaaaacctgatcgagtctccaagattagactgcagttc
aaaacctttctttctgaagcaactggattttatcatgaacttatattgaagataagagca
aagtatggtcttcctttagggcatatttctgaggattctgagaatcaaattaccatggac
aaagatgggaagaaacttgccgaggtgaagaaaggtttggtatcttgccaccgttgtctt
atatacttgggtgaccttgcaaggtacaaaggattatacggggagggtgattccaaatct
cgtgaatatgcaacagcttcgagttactatttgcaatctgcatctcttgttccctcaagt
ggcaacccccatcatcagcttgctatattggcttcttattctggtgatgagttggttgtt
gtttatcgttattttcggagtttggctgttgataccccctgtacaactgccagggataac
ttgattgtattatttgagaagaaccgtcagatatactctcagatgtctggggatgttaaa
ttgtctactgccaaggagcatcaacgcaaaggaagagggaaaggtgaagcaaaacttgct
tctagagatactgacatagaggccagctctgtgaaggaaattgtgcctagtgtacaggag
atgctcaaatcattttgcacccgctttgtgcgtttaaatggcattcttttcacacgtaca
agtctggagacatttgcagaagtccttgcttttgttagcagtggattatgtgagcttctt
tcatctggcccaggggaggagctgagttttggattagatgcagctgagaatgctcttttt
attgttaggtttatctccatccttgtattcacagtccataatttgaaaaaggaaactgaa
aatcagacttatgcagaaatcgtacagcgtgctgtgcttcttcagaatgctttcactgct
gtgtttgagttaatggggcatgtcatagagagatgtattcagctgagggatccatcttca
agttatctgttacctggtcttctggtttttgttgagtggttggcgtgctgtccagaaata
gctgctggcagtgatggtaatgagaagctggcaactgttcgaacaaatttttggaatcag
tgcatatccttcctgaataaaattctgtcactggggccaatgtccatggatgatgatgaa
gatataacttgcttttttaacatgagcaggtatgatgaaggggaaactgaaaatcgactg
gctttatgggaggattttgagttgagaggattctcacctcttcttcctgcacatactatc
ttggatttttcaaggaaacattcctttggaggtgatatcaataaggaaaggaaagcccgc
cttaaaaggattctagctgctgggaaggcattgacaaatgtagttactgttgaccaaaaa
acagtatgctttgattcaagggtgaagaaatttcttatcggtgttgagccttcggatgat
gtaacattcagctcctacccagacgtttccaactcaaatgatatagtgcaagaaaatcaa
actgagaaagagattgatttggctgttgttcaaccaaacctagagctttacatggatggg
gaagaggaggatgaagtgattgtttttaagccagcagtgacagagaagagagcagatgca
attggctcaaactggatgtcctttgatggcttgaagcctgctcataatgcatctgctagt
gatctgcaattacatggtggtcctgtttcggctcctataaataagctataccaggcatct
acttttgataatagttcccaagtacctgtatctgttgctagtattctacctcagcagctc
cagccgtttcaactgcatgcttcaaactggttaatgaaagaagaagcttctcttgctaat
agcttaaaaggtttgagggtctcagaaaatgagcatgttgtgaaacatgatttgcaggaa
aatataggcgtttcattcccagattttgggctggttccaatccagcaatctgttaatgct
agtactagtagtttggcctacagtcatttgaaagagccagaagctatgataccacccaag
attgatgctgttgctggagttacttttgacagtttagctgtaaaagctacatcagcattg
ccagcaggccagaggaaaaatccagttagccgccctgttcggcatcttggacctccacct
ggcttcagccctgttccttccaaacaagtgactgcaccaatttcggcttcatacttgact
agcgaaaatcctctgattgatgattacagctggttggatggatatcggttgccaccttca
acgagaggccttggtatttccaccaattatccatcacatgcaaatcctcaatatatcggt
aatagcaatggtgttacggggacagtcagctttccgtttcctggaaaacaagctccagca
atgcagcagctccagtttgaaaaacagaaaggctggcaggatttccaaacttttgatcat
ctaaaattgcagcatgaacagcagctgcagcaacagcaattgggtaatgggaaccagcag
tttgctcctctgcctgagcaatatcaaggacagtctatctgggccggtcgttatttcgtg
tga
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