Mangifera indica (mango): 123208368
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Entry
123208368 CDS
T07684
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123208368
03015 mRNA surveillance pathway
123208368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123208368
03041 Spliceosome [BR:
minc03041
]
123208368
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123208368
Spliceosome [BR:
minc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
123208368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
123208368
NCBI-ProteinID:
XP_044481768
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All DBs
Position
2:16447584..16453449
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AA seq
933 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAAELDHLVDMAKVKMDVIRPWIANRVTELL
GFEDEVLINFIYGLLDGKEVNGKEVQISLTGFMEKNTGKFMKELWILLLSAQKNASGVPQ
QFLDAKEEETRKKKVEADRIANEIQKKKEKESRELDQERLKKMDGAVEMKAAAADALDAN
AKTTLAKDSSIWSEDGKGPGERNGVRGRSRVPKSPQSAGHSPSPHRGSPSRSFSKSHSNS
RSYSDSGRRKSRSVSRSPEARRRSISADRVHHSLRRRSITPRRRHSPPLSRSPRRRSSYL
RRRSRSRSLRRSPSPLRRRRNSPSPMLHGSPSLARHRRSPSPVVRRRRSPSPVRRHRSPS
PVRRRRSPSPIRRRGSPSPVRRRRSPSPVWHRRSPSPVRRRRSPSPVRCRRSPSPIRRRR
SPSPIRRRRSPLPIRHRRSPSPMERESLSPVRRGLSLVHHRTPSPVRCRSPSPVHHTSLS
PVQQRYQRSPLTPQRQSTSLMQKSSLVPARMRPHTPSHHRSPSPYESSSPSPTRRRDLSP
VKRKSPSEYKRSPVQSPREKFRTRESLSPAVHRHSSSLRSPLRDLKDQNDLRKRSAISPS
PERSPAVSESPLHAPRKRRTSEDRRSFSPCDSPVRQARLARIDDSNLSPPQKPRDKLRQG
GPDTSKERKGANQTRDHKSVSSHRSMQKEDYSPDTVAPDCHPPESGSQPDKMDLKKKNQD
LRSEKSSGRSAHPVTVDQEKSPILPAERRQSSYPGESRRSDERNHSRSRNGKDSDQRHKS
ENVTMVIEKVDHGNRSDTVDSGSEESYKHRNDNKEKRKHKYERKEVASDDDYSYDSETER
KQAKRRRKEEKKLRKEEKRRRRDEKRRRKEERRAEKLKLKNHNDADGSDGEHVPKRVSHP
SEDEATESEQKRLEIELRNKALESIKAKKISSR
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgggttcttcaggggcacctcggctgatcaagatacgcggttctcgaacaag
caagcgaagctcatgaaatcgcagaaattcgcggctgaactggaccatctggtggacatg
gcaaaagtgaagatggatgttattagaccatggattgctaatagggttactgagctactt
ggctttgaagatgaagttctcatcaacttcatttatggtcttcttgatggaaaggaggtg
aatgggaaagaggtccagatatcacttactggtttcatggaaaaaaatactggtaagttt
atgaaagagctttggatacttctcctcagtgcgcaaaagaatgctagtggagttcctcaa
cagttcttggatgccaaggaagaagaaacaaggaaaaaaaaggtggaggcagataggata
gcaaatgaaattcagaagaagaaagagaaggaaagtagagaacttgaccaagagagattg
aagaagatggacggtgcagttgaaatgaaggctgctgctgctgatgctttggatgcaaac
gcaaagactacgcttgcaaaggattcgagtatctggtccgaggatgggaaaggacctggt
gagaggaatggtgtgagaggaaggagcagggttcctaagtctcctcagtcggctggtcat
tctccttcacctcatcgaggttcaccttccaggtcattcagcaagtctcattccaattcc
agaagttattcagacagtggcaggcgtaagtcaaggagtgtgtctagatcacctgaagca
cgaaggcgctctatttctgctgatagggtgcaccactctttgagaagacgatcaattaca
ccccgtaggagacattcacctccgttatcccgctctcctagacgaagatcatcttattta
aggcgaagatctaggtcacggtcgcttcgcagatcaccttcgcccttacgacgtagacgt
aattcaccctcacctatgcttcatggatcaccatctcttgctcgacatcgtagatcacca
tctcctgttgttcgacgccgtaggtcgccatcacctgtgcggcgccataggtcaccatca
cctgttcgacgtcgtaggtcaccatcacctattcggcgccgtgggtcaccatcacctgtt
cgtcgccgaaggtcaccatcacctgtttggcatcgtaggtcaccatcacctgttcgacgt
cgtaggtcaccgtcacctgttcggtgtcgtaggtcaccttcaccaattcggcgtcgtagg
tcaccttcaccaattcggcgtcgtagatcacctttaccaattcgacatcgtagatcacct
tcacccatggaacgtgaatctctttcacctgtgcgacgtggcctttctctggtgcatcat
aggaccccttcgcctgtgcgttgtaggtcgccttcgcctgttcatcatacttcactctct
cctgtgcaacaacggtatcaaagatctcctttgactccacaacgccaatctacatctctc
atgcaaaaaagttcacttgttcctgctcgcatgagaccacatactccatcccatcatagg
tctccttcaccctatgaatcaagttctccatctcctacacggcgtagggatctatctccg
gttaagaggaaatctcccagtgagtataagagatcacccgtgcaatctcctagagagaaa
tttagaactcgtgagagtttgtctcctgctgtgcatcgacattccagctctttgaggtca
ccacttagagatttaaaggaccagaatgatttacgtaagaggtcagctatttcaccttca
ccagagaggtctccggctgtgtcagaatcccctctacatgcaccaaggaaaaggagaact
agtgaagataggaggtcatttagtccatgtgatagccctgtgaggcaggccaggcttgcg
aggattgatgatagcaacttgagtcctccacaaaaaccaagagataaacttcgccagggt
ggtccagatacaagcaaggagcgaaaaggtgccaatcagactagggatcataaatctgtg
tcatcacatagatctatgcagaaggaagattattctccagacacagttgcaccagattgt
caccctcctgaatctgggagccaacctgataagatggatttgaagaagaaaaaccaggat
ttaaggagtgaaaaatcctctgggaggagtgctcatcctgtaactgttgatcaagaaaag
tcaccaatcttgcctgctgagaggcgtcaatcatcataccctggagaaagtagaagatct
gatgagagaaaccactctcgttcaaggaatggcaaggacagtgatcaacgacataaatca
gaaaatgtgacaatggtcattgaaaaagttgatcatggaaaccggagtgatactgttgat
tctggttctgaggaaagttacaaacatagaaacgataataaggaaaagagaaagcataaa
tatgagagaaaagaagtggcttcagatgatgactacagttatgattctgaaactgagagg
aagcaggctaagaggaggagaaaggaagaaaagaaattaagaaaagaggaaaagcgtcga
aggcgtgatgagaagcgtcgtaggaaggaagagcgacgtgcagagaagctcaaattgaaa
aatcataatgatgctgatggttcagatggagaacatgttcctaaaagggtgtctcatcca
agtgaagatgaagcaacagaatctgaacagaaaaggcttgaaattgagttacgaaataag
gccttagaatccatcaaagcaaagaagatcagcagtcgctaa
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