Mangifera indica (mango): 123208929
Help
Entry
123208929 CDS
T07684
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123208929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123208929
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123208929
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123208929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
123208929
NCBI-ProteinID:
XP_044482514
LinkDB
All DBs
Position
2:complement(18032448..18038940)
Genome browser
AA seq
664 aa
AA seq
DB search
MSGLLNSSLNGSASNIPDGAGRSFATSFSAQSGAASPVFHHTGTIQGLHNIHGSFNVPNM
PGTLTSRNSTMNNVPSGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFNSNTNGVGGSIPGILPTSAAIANRNAVPGLGVSPILGNTGPRLTSSMGNMVA
GGNIGRNISSGGGLAVPGLASRLNLSANSGSGNLSVQGQNRLMSGVLPQASPQVISMLGN
SYSATGGPLSQSHIQVNNLSSMGMLNDVNSNDNSPFDINTDFPLLTSRPSSAGGPQGQLG
SLRKQGIGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYSMDLHQKEQLHENTMSMMQSQ
HFSMGRSAGFNLGGTYSSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSNS
NYHSQTSGPPSIGLRPLNSANPVSGIGSYDQLIQQYQHQNQSQFRLQQMSVNQSFRNQDI
KSMQSAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSAENLHKTFGSPWS
DEPAKGDPEFTVPQCYYAKQPPVLHKGYFTKFSVETLFYIFYSMPKDEAQLYAANELYNR
GWLYHKDHRYWFIRVPNVEPLVKTSTYERGSYHCFDPSTFETIRKDNFVLYYEMVDKRPT
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctctcaatggatcggcttcaaatattccagacggtgct
gggcgatcatttgccacatctttctcggcacagtctggtgcggcttcccctgttttccat
cacactggaactattcagggacttcataatattcatgggagctttaatgttcccaatatg
ccaggcacacttacttcaagaaactcaacaatgaataatgttccatctggtggggttcaa
caacctactggaagcctttctagtggaagatttgcgtcaaataatctgcctgttgctcta
tcccagttatctcatggaagctctcatggacattcaggagtcacaaacagagggggtata
agtgttgttgggaaccctggatttaatagtaacacaaatggagttggtggttctattcct
gggattcttccaacctctgcagcaattgctaaccgaaatgctgttccaggattgggagta
tccccaattttgggtaatacaggtcctcgcttaacaagttcaatgggaaacatggttgca
gggggtaacattggaaggaacataagctctggtggaggattagctgtacctggtcttgca
tctcgcttaaatctatctgcaaatagtggatctggaaatctgagtgtgcaaggacaaaat
aggttgatgagtggtgtgcttccacaagcatctccacaggttatttctatgttaggaaat
tcctattctgctactggtggtccgctttcccaaagtcacattcaagtgaacaacctaagt
tctatgggaatgttgaatgatgttaactctaatgacaattctccgtttgatataaatact
gatttcccgctgttgacaagtcgtcctagttcagcaggaggccctcaaggtcaattgggt
tcactaaggaaacaaggtattggagttagtcccattgttcagcaaaaccaagagttcagc
atccaaaatgaagattttcctgctttacctggatttaaaggaggtaatgctgactattct
atggatttacatcagaaagaacaacttcatgaaaacaccatgtcaatgatgcaatctcag
cacttctctatgggccgatctgctggatttaatttaggtggtacctactcttctcatcgt
ccacagcagcaacagcaacatgctccatctgttagtagtagtggtgtctccttttcatcg
gttaacaaccaggatcttctccatttacatggttctgatatgttcccatcttcaaattca
aactaccactcacagaccagtggaccacccagcataggactaagacctttgaattctgcc
aatccagtttctggtattggctcgtatgaccagcttattcagcagtatcaacatcagaac
caatctcaatttcgcctgcaacagatgtctgtcaatcagtcatttaggaatcaggatata
aaatccatgcaatctgcacattctactcctgatccgtttggcttacttggcttgttaagt
gtgataaagatgagtgatcctgatctgacttcgcttgcacttggaattgacctgacaaca
cttgggttgaacttgaattcagcagaaaatcttcataagacttttggttcaccatggtct
gatgaaccagccaagggcgatccagagttcactgtgccacaatgttattatgctaaacaa
ccacctgtgctacataaaggttacttcacaaagttttcagtggaaacattgttctatata
ttttacagcatgccaaaagatgaggcccaattatatgctgcaaatgaactttataatagg
ggttggttgtatcacaaggatcatcggtattggttcatcagagtccctaatgtggagcca
ctagttaagaccagcacatatgagcgggggtcttatcactgttttgatccaagcactttt
gaaacaatccgcaaggataattttgttttgtattacgaaatggtggataagagaccaact
ttaccgcagcattaa
DBGET
integrated database retrieval system
