Mangifera indica (mango): 123209000
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Entry
123209000 CDS
T07684
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123209000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123209000
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123209000
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123209000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
123209000
NCBI-ProteinID:
XP_044482634
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All DBs
Position
2:22217533..22227865
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AA seq
892 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVGELESQIDNFEAEIEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSEVDELYSTLPLDKVES
LEDLVTIGPPGLVKGAPALSLKTSLAASASQMPATVTSTHQHGTSVPEVAEDTASQDSNS
EIVARTPPSKSSGISSSTASTPTVGQTTPIAISVPAHNLSSVSNASAVLSSSSSIRAGLD
NTSAISSSPPVNLTNLTKEEDIVSFPGHRSSPSLADVRGIGRGSLSGQPTSSIPLSSATA
VPSNGNLGSVPSVSDMAKRNILGADERLGSSGMVQSLVSPLSNRMMLPQAAKGNDGTGSV
ESNIAAEGMAIGSRVFSPSVSMQWRPGSSFQNQNEPGQFRGRTEITPDQREKFLQRLQQV
QQQNHSNLLGIGGGNNKQFSSQQQNPLLQQFTPNSSMSQPGLGLGVQAPVLSPVTSASLQ
QQPNSIHQQSSQQALMPSGQKDSADVGHLKVEEQQQQQNLPDESTVESVPGPGLGKNVMN
EDDLKVSYAMESPAGVSGSLTEPAQVVREIDLSPGQPLQSSQPSGGLGVIGRRSVSDLGA
VGDNLNGSTVNSGAVHDQMYNLKMLESAFYKLPQPKDSERARSYIPRHPAVTPHNYPQVQ
APIVNNPAFWERFSPESFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR
HEEPKVATDEYEQGTYVYFDFHIASDDPQHGWCQRIKTEFTFEYNYLEDELM
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcgcaagctacaaggtgagatcgatcgagtgctgaagaaggtccaagaa
ggtgttgatgtattcgatagtatctggaacaaggtatatgatacagacaatgcaaaccag
aaggagaagtttgaagctgacttgaagaaggaaatcaagaagctgcagaggtaccgtgat
cagatcaagacatggattcagtctagtgagatcaaggataagaaagtcagtgcctcttat
gagcaagccctggtggatgctcgtaagcttattgagcgtgaaatggaaagatttaagatt
tgtgaaaaggaaactaagacaaaagcattttctaaagaagggttgggacaacaaccaaaa
actgatccaaaggagaaagccaaggcagagacaagggattggttgaataatgtggttggg
gagttagaatcccagattgataattttgaagcagaaattgaagggctatctgtgaagaag
gggaagacaaggccacccagattgacacatttagagacttctattacacgacacaaagct
catattatgaagttagaattgatcttgaggctactagataatgatgaactgagtccagag
caggtcaatgacgttaaagacttcttggatgactatgtggaacgtaatcaggaggatttt
gaagaatttagcgaggttgatgagctctacagcacattaccactagacaaggtggaatcc
cttgaagatttggttacaattggtcctccaggtcttgttaagggtgctccagctcttagc
ttgaagacttccttggctgcatcagcatctcaaatgcctgctactgtcacttccacacat
cagcatggtacttctgtccctgaagtagctgaagatacagcttcccaggatagtaattca
gaaatagttgcaaggacgccaccttcaaaaagtagtggaattagttcttcaactgcatca
actccaactgttggtcaaacaactcccattgccatcagtgtcccagcacataatttgtct
agtgtgtcaaatgcttcagctgtactttcaagttcaagttctattcgagctggattggat
aacacaagtgccatcagttcttctcctccagtaaatttgacaaatcttactaaggaagaa
gacattgtgagcttcccaggccatagatcatctccatctcttgcagatgtaaggggcatt
ggaagaggcagcctctccggccaacctacatctagcatacctcttagttctgccactgcg
gttccaagcaatggaaaccttggctcagttccttcagtctcagatatggcaaagagaaat
attttgggagctgatgaaagacttggcagtagtggcatggtgcaatctctggtttcccca
cttagtaacagaatgatgttgcctcaggctgccaagggtaatgatggaactggatcagtt
gagtccaatattgctgcagagggtatggccataggtagcagagttttctctccttcagtg
agcatgcagtggaggcctggaagttcctttcaaaaccagaatgaaccggggcagtttcgt
ggaagaactgaaattactcctgatcagagggagaagttcttgcaacggctccaacaagtg
cagcaacaaaatcacagtaaccttcttggcattggtggtggaaataataagcagttttct
tcgcaacagcaaaacccactgctgcagcagtttacaccaaactcatccatgtctcaacct
ggtctgggactcggagttcaggcaccagtgctcagtcctgttacatctgccagcttgcaa
cagcagccaaattctatccatcaacaatctagtcagcaggcattgatgcctagcggtcag
aaagattcagcagatgttggccacctgaaagttgaggagcagcagcaacagcagaattta
cctgatgaatcaactgtcgaatctgttcccggtcctgggcttggcaagaatgttatgaac
gaggatgatctcaaagtttcatatgcaatggagtctcctgcaggagtgtctggctctttg
acggagcctgctcaagtagttagagagattgatttatctcctgggcaaccattacagtcc
agccagccttctggtggccttggtgttataggtcggagaagtgtttctgatctcggtgcc
gttggtgacaatttgaatggttcaactgtgaattctggagcagtgcacgatcagatgtat
aatttgaagatgcttgagtctgcattttataaacttccacaaccaaaggactcagagcgt
gccaggagctacattcctaggcaccctgcagtgacacctcataactatcctcaagttcag
gcacctattgtgaataatcctgccttttgggagcgattttcaccggagagttttggtact
gatacactgttctttgcattctactatcaacagaacacataccaacaatatttggctgca
aaagagctaaaaaagcaatcatggaggtaccacagaaaatacaatacatggttccaacgg
cacgaggagccaaaagttgctaccgatgaatatgaacaagggacctatgtgtactttgat
tttcatattgccagtgatgatccccaacatggatggtgtcaaagaattaagacggagttc
acttttgagtacaactatcttgaagacgagctcatgtaa
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