Mangifera indica (mango): 123210862
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Entry
123210862 CDS
T07684
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
minc
Mangifera indica (mango)
Pathway
minc03030
DNA replication
minc03420
Nucleotide excision repair
minc03430
Mismatch repair
minc03440
Homologous recombination
minc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123210862
03420 Nucleotide excision repair
123210862
03430 Mismatch repair
123210862
03440 Homologous recombination
123210862
03460 Fanconi anemia pathway
123210862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
minc03000
]
123210862
03032 DNA replication proteins [BR:
minc03032
]
123210862
03400 DNA repair and recombination proteins [BR:
minc03400
]
123210862
Transcription factors [BR:
minc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
123210862
DNA replication proteins [BR:
minc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
123210862
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
123210862
MMR (mismatch excision repair)
123210862
DSBR (double strand breaks repair)
HR (homologous recombination)
123210862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
123210862
NCBI-ProteinID:
XP_044485289
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All DBs
Position
3:complement(10311859..10315293)
Genome browser
AA seq
623 aa
AA seq
DB search
MAKTVTPDAISILLSNPSPDSSSNLPEIVVQVLDLKLTGNRYMFNASDGKLTVRGILPSN
LSSEVISGNIQNKGLIRILDYTVNDIPTKSEKYLIVTKCEVVAPALEMEIKSEVKSEEVG
IILKPKQENEMKSEVKREGAGILVKPKQEIVTKSAAQIVHEQRGNMAPSARLAMTRRVHP
LVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKF
YDRFQLGKVYYISRGTLRVANKQFKTVQNDYEMNLNENSEVEEASNEETFIPETKFNFVQ
IDELGRYVNGSDLVDVIGVLQSVSPTMSIRRKSNNEMVPKRDITVADETKRTVVVSLWND
LATNLGQELLDVVDQSPVVAIKSLKVGDFQGISLSAVGRSTVLINPDIPESKKLKAWFDS
EGKGTSMAPVGSGLSPSTKTGVRSMYSDRVTLSHITSDPSMGEEKPVYFSIRGFISLIKP
DQTMWYRACKTCNKKVTDGMGSGYWCEGCQKNDDECSLRYIMVVRVSDESGEAWISVFNN
EAEKMIGCSADELDKLKSQMEENSYQMKLKEVTWVPYLFRVSVTQHEYNNEKRQRITARD
VAPVDFAAESKLLLEELTKKASQ
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacagttaccccagatgcaatatcaatcttattgtcaaatccctctccagat
tcatcctctaatctccctgagatcgtagtccaagtcttagatctcaagctcactggcaat
cgatacatgtttaatgctagtgatgggaagctgactgtaaggggcattttgccatcaaat
ttatcgtcggaagtcatctcaggaaacattcagaataagggcctcattcgtattctcgat
tacactgtcaacgatatcccaactaaatctgaaaaatacctgattgtgacgaaatgtgag
gtggtagcgcctgcacttgaaatggagatcaagagtgaggtgaaaagcgaggaagttggc
ataattttgaagccaaaacaagaaaatgagatgaaaagtgaggttaaaagagaaggggct
ggcattcttgtgaagccgaaacaagaaatagtcactaaatctgctgctcaaatagttcat
gaacaacgtggaaatatggctccttctgctcgattggcaatgaccagaagggttcatcct
ttagtttccttgaacccctaccaaggcaattggactataaaagttagtgttacgagcaaa
ggaaacatgcgtacttataagaatgcaagaggagaaggatgcgtcttcaatgtggagtta
acggatgaagatggtacccaaatacaagcaacaatgttcaatgaagccgcaaggaagttc
tatgataggttccaattagggaaggtgtattacatatctcggggaactcttagggttgct
aacaagcaattcaagacagtgcaaaatgattatgaaatgaacttgaatgaaaattctgag
gtggaagaggccagtaatgaagaaaccttcattcctgaaacaaaatttaattttgttcag
attgatgagttgggtcgttatgttaatggcagtgaccttgttgatgttatcggagtcctt
caaagtgtttctccaacaatgagcatccgaaggaaaagtaacaatgaaatggttccaaag
cgtgatataactgttgcagatgagacgaagaggacagttgtggtctctttgtggaatgac
ctggcaactaatctgggccaggaattgcttgatgtggttgatcaatctcctgtagttgcg
attaaatccctcaaagtaggagactttcaaggaatatctttgtcagcagttggcagaagc
acagtactgatcaatcctgatattccagaatcaaagaagttgaaggcctggtttgactct
gaaggtaaagggacttcaatggctcctgttggctctggtttgagtccttcaaccaagact
ggagtgaggtctatgtactctgatcgagtaaccctttctcacataacgagtgatccatca
atgggagaagaaaagcctgtgtattttagcattagaggatttataagccttatcaagcct
gatcagactatgtggtaccgtgcttgcaaaacctgcaacaagaaagtcacggatggcatg
ggatctgggtattggtgtgagggatgccagaaaaatgatgatgaatgcagtttaagatac
attatggttgtaagagtttctgatgaaagtggagaagcttggatttctgtattcaacaat
gaggcagaaaagatgattgggtgctctgctgatgagcttgataaattgaagtcacagatg
gaagagaattcataccaaatgaaattgaaggaagttacttgggttccataccttttccgg
gttagtgtcactcaacacgaatacaacaatgagaagaggcaaaggataactgccagggat
gttgctccagttgattttgctgcagaatccaagcttttgctagaagagttaacaaagaaa
gcttctcaatag
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