Mangifera indica (mango): 123211394
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Entry
123211394 CDS
T07684
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123211394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123211394
03009 Ribosome biogenesis [BR:
minc03009
]
123211394
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123211394
Spliceosome [BR:
minc03041
]
Complex A
U1 snRNP components
U1 related factors
123211394
Complex B
123211394
Ribosome biogenesis [BR:
minc03009
]
Eukaryotic type
Pre-60S particles
Helicases
123211394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
123211394
NCBI-ProteinID:
XP_044486021
LinkDB
All DBs
Position
3:complement(3019148..3023311)
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AA seq
592 aa
AA seq
DB search
MGPTPPIGRPPLMGRGGPSQYGGPPPAAGFSGRGPGVGGGSVSGMHQPVGRFDVGRGGGG
RGFSSSRGRSSDRRGGGRGRDSGGKGFDSGRGGGRGGGPRGRGGRHGGGTYRDDLENISX
PKQDFGNLVPFEKNFYVESPSVRAMTETEVMMYRARREITIEGHDVPKPVRMFHEANFPD
YCLEVIAKLGFVEPTAIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLV
QGEGPIVLVLAPTRELAVQIQEEALKFGSRASIRSTCIYGGAPKGPQIRDLRRGVEIIIA
TPGRLIDMLDAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWP
REVETLARQFLRNPYRVIIGSADLKANQSINQVVEVLTESEKYNRLIKLLKEVMDGNRIL
IFTETKKGCDQITRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGL
DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHSNVKFARDLIKILQEAGQ
IVSPSLSSLARSSGSSFGGSGGHYHSRGRGGFTNRSSISGSNTIPLGSRRPW
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgggcccaacacctccaattgggcggcctccattaatgggacggggcgggccttctcag
tacggtggtcctccacctgcagctggcttttcgggaagaggacctggagtcggtggcgga
tccgtttccggcatgcatcaaccagtcggtagattcgatgttggccgtggcggcggtgga
aggggatttagtagtagtagaggccgtagttcagatagaagaggcggtgggcgtggtcgt
gacagtggagggaaaggctttgactcgggccgcggcggtggtagaggtggtggacctcgt
ggaagaggaggtagacatggtggtggtacttatcgagatgacttggaaaatatttcgnct
ccgaagcaagatttcggaaatttagttccttttgagaagaacttctatgttgaaagccca
tctgtacgtgcgatgacggaaacggaggttatgatgtatcgtgctaggagggagattacg
attgaaggtcatgatgttcctaagcctgttcggatgtttcacgaggcgaattttcctgat
tactgcctagaggtcattgctaaattaggatttgttgagccaacggccattcaggctcag
ggatggcctatggctttgaagggtagagatttaattggcattgcagagactgggtcggga
aaaactttgtcatatctgttacctgctttggttcatgttagcgctcagccaagattggtt
caaggcgaaggtcctattgtgttagtattagcacctactagagaattagctgttcaaatt
caggaagaagctctgaaatttgggtcacgggcaagcattagaagtacttgcatctatggt
ggtgctcctaaagggccacaaatccgggatcttcgaagaggtgttgaaatcatcattgca
acccctggtcgactgatagatatgttggatgctcaacacacaaacttgcgaagagtgact
taccttgtgttggatgaggctgatcggatgttggacatgggctttgagcctcagataagg
aaaattgttgctcagatccgacctgatagacagactttgtattggagtgctacatggcca
agggaagttgaaactctagctaggcagtttctgcgcaatccatacagggtaatcattgga
tcagcagatctaaaagccaaccaatctataaatcaagttgttgaagttttgacagagtca
gagaagtacaacaggctgatcaaactattgaaagaagtgatggatgggaatcgaattcta
atattcacagaaaccaaaaagggatgtgaccaaattacaagacaactaagaatggatgga
tggcctgctctgtccattcatggtgataaaaaccaggctgaaagggattgggttctggct
gaatttaaaagtggaagaagtcctataatgaccgctactgatgttgctgcacggggtctt
gatgtgaaggatataaaatgtgtgatcaattatgattttccatccagccttgaggattat
gttcaccgaattggccgaactggtcgtgctggagccaaaggaaccgcttttacctttttt
acacattcaaatgtaaagtttgctagggatctaatcaagatcttgcaagaagcaggacag
attgtgagcccctctctgtcatctttggcacgatcttctggttctagttttggaggttct
ggggggcactatcactccagaggacgaggaggctttacaaaccgatcttcaatttcaggg
tcaaatactattcctcttggttcaaggaggccgtggtaa
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