Mangifera indica (mango): 123211792
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Entry
123211792 CDS
T07684
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
minc
Mangifera indica (mango)
Pathway
minc03440
Homologous recombination
minc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123211792
03450 Non-homologous end-joining
123211792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
minc03032
]
123211792
03400 DNA repair and recombination proteins [BR:
minc03400
]
123211792
DNA replication proteins [BR:
minc03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
123211792
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
123211792
BRCA1-C complex
123211792
NHEJ (non-homologous end-joining)
MRX complex
123211792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
Rad50_zn_hook
SbcC_Walker_B
AAA_21
AAA_29
OVT1
DUF6447
ABC_tran
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
123211792
NCBI-ProteinID:
XP_044486624
LinkDB
All DBs
Position
3:14672891..14690075
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQNQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTESLKS
QMQELERNIQVVDAKIHHTETTLKDLRKLQDQISTKTAQRSTLFKEQQKQYAALAEENED
TDEELREWKTKFEERIAILENKISKLEREINDKETESSFLKQSINDCIWEISKLQTEAEA
HISLKNERDSTIQKLFARYNLGSLPDAPFSIEASLNLTNRIKSRLMDLEKDLEDKKKSNE
QELKTAWESYMDANDRWKNIEAQKQAKMEIKSRILKRIGEKENERDSFELQISNVNLSHI
DERENYMRIEVERKTNQLAEREFELNIRQKQSELFGIEQNLKALNREKDIMAGESEDRVK
LSLKKAELETHKKKHKRIIDEYKDKIRGVLKGRLPPDKDLKKEITQALRALVMEFDDLSS
KSREAEKEVNMLQMKIQEVNNNLSKHRKDVDSKKRFIESKLQSMNRESFTIDSYPKVLDS
AKDKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDDFVKKQRVKAAS
SAEHMKVLAVESSNADSYFQQVDKLRMVYEEYLKIDKETIPLAEKNLHELTEELDQKSQA
FDDVLGILAQIKADKESVEALLQPVETVDRLFQEIQTWQKQVDDLEYMLDSRGQGVRTME
EIQTEINGLQSTKDGLHNELEKLRDEQRYMENDLSNVQIRWHTLREEKVKAANTLRDVKK
AEEELERLVEEKIQVELDEKHLSEALGPLSREKEKFLSDYNNLKVKLNQEYEEQAEQKRN
YQQEIETLLKTTSKIKEYYDLKKGDKLKELQEKKSSLELQLRNCDTRKQEILVDLNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDELSSEIESLEEEILKIGGVSAVESNLTKISQERE
RLLSELNRSQGTMSVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYICIHSDSEGAGTRSYSYRVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVTKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggttgataagatgcttataaaaggaatccggagtttcgacccggaaaacaag
aacgtcatcaccttcttcaagcctttaactctgattgttggccccaatggcgccgggaaa
acgaccattatagagtgcttgaagctttcttgcactggagagttgcctcccaatgcaagg
tctggccacagttttattcatgatcccaaggtggctggagaaacagagacaaaagggcaa
attaagcttcgttttaagacggctgcaggcaaggatgtggtttgcataaggtcatttcaa
cttacacaaaaagcatctaagatggaatacaaggcaattgaaagtgtgcttcaaacgata
aatcctcatacaggggagaaagtttgccttagttatagatgtgcagacatggatcgggaa
ataccagctctaatgggtgtttcaaaggccattcttgaaaatgttatatttgtacaccaa
gacgaagccaattggccattgcaagacccctcaacattgaaaaagaagtttgatgacatc
ttttctgcaacccggtatacaaaggctttggaggtcattaaaaaacttcacaaggatcag
aatcaagagataaagacttacaagctgaaactggagaatcttcagaccttaaaagatgct
gcatataagctgcgcgaaagcatttctcaagatcaagagaaaacagaatccttgaaaagt
caaatgcaggagctcgaaagaaacatccaagttgtggatgctaaaattcatcatactgaa
acaacactgaaagatttgcgtaaactacaggaccagatatcaactaaaactgctcaaagg
agcactttgtttaaggagcaacagaaacagtatgcagctcttgctgaggaaaatgaagat
accgatgaagaattgagggaatggaaaaccaagtttgaagaaagaatagcaattttagag
aataaaattagcaaactggagagagaaataaatgacaaggaaacagaaagttctttcctg
aagcagagtataaatgattgcatatgggagattagcaagcttcagacagaagctgaagct
catatttccttgaagaatgaaagggattccaccattcagaaactattcgcaagatataat
ttagggtctcttccagatgcaccattcagtattgaagcttctttgaacctcactaatcgt
ataaagtcaaggttaatggatcttgagaaggatttggaagataaaaagaagtcaaatgaa
caagaacttaagacagcatgggaaagctacatggatgcaaatgatcgttggaagaatatt
gaggctcaaaaacaagctaaaatggaaattaagagtcgtattttgaaacgcattggggag
aaggaaaatgaacgtgattcatttgaacttcaaatatctaatgtcaatctttctcacatc
gatgagagggaaaattacatgcgaattgaggttgagagaaagactaatcagcttgctgaa
agagaatttgaattaaacatacgccagaagcagagtgaactgtttggcatagagcaaaat
ctcaaggctttaaatcgagagaaagacataatggctggtgagtctgaggacagagtgaag
ctgtctctgaagaaggcagagttggagactcacaagaagaaacataaaaggataattgat
gagtacaaggataaaatcagaggagtgcttaaagggaggcttcctcctgacaaggatttg
aaaaaggaaattactcaagccctaagggctcttgtaatggagtttgatgatttgagctca
aaatcccgtgaagctgagaaggaagtaaacatgttgcagatgaaaatacaagaagttaat
aataacctgtccaaacatcgcaaggatgtcgactcaaagaagagatttattgagtccaaa
ctccagtccatgaatcgggaatctttcaccattgattcttatccaaaagtcttggattcg
gctaaggataaaagagatgttcagaaaagtaagtacaacattgcagatggtatgcggcag
atgtttgatccttttgaaagggttgcccgtgctcatcatgtttgcccttgctgtgagcgt
ccattctctgctgaagaggaagatgactttgttaaaaagcaaagagtaaaggcagcaagt
tcagctgagcacatgaaagtattggctgtggagtcctcaaatgctgattcttattttcag
caggtggacaaacttcgtatggtttatgaagaatatctcaaaattgacaaggaaacaatc
cctcttgctgagaagaatctgcatgagctaactgaagagctggatcagaagtcacaagct
tttgatgatgtgttaggcattttagctcaaataaaggctgataaggaatcagttgaagcc
ttgttgcaacctgttgaaactgttgacagactcttccaagaaattcaaacttggcaaaag
caagttgatgatttggagtacatgcttgattctcgaggacaaggtgttagaaccatggag
gaaattcagacagagataaatggtttgcagagcacaaaagatggtttgcataatgaactg
gagaagttaagggatgaacaaagatacatggagaatgatttgtcaaacgttcaaataagg
tggcacactctgagggaagaaaaagttaaagcagcaaatacattgcgggatgttaaaaag
gcagaagaagagttggagcgattggttgaggaaaaaattcaagttgaacttgatgagaag
catttatcagaggcgcttggtcctctatccagggagaaagagaaatttttgagtgactac
aacaatttgaaagtcaaacttaatcaagaatatgaggagcaggctgagcaaaaaagaaac
taccaacaggaaatcgagacactgcttaaaactacttctaagattaaagagtattatgat
ttgaagaaaggtgataagttaaaggaactgcaagaaaagaaatcttcattggaattgcaa
cttcgaaattgtgatactagaaagcaggagattttggttgatctgaacaaaagcaaagac
ttgatgcggaatcaagatcagctaagaagaaatattgaggacaatttgaattacaggaag
acaaaagctgaagttgatgaacttagttctgagattgaatcactggaagaggaaatattg
aaaattggaggggtttcagctgttgaatccaatctgacaaagatctctcaagaaagggaa
agacttctttcagagttaaacaggagccagggaacgatgtctgtttatcagagcaatatt
tcaaagaacaaaattgatcttaagcaggcacaatataaagacattgacaaacgatacttt
gatcagctaatccaacttaagacaacagagatggcaaacaaggacctggacagatactac
aatgcacttgacaaagcactcatgcgcttccacacaatgaaaatggaggaaataaataaa
ataataagggaactgtggcagcaaacatacagaggacaagacatagactacatttgcatt
cattcagattctgaaggtgctgggactcgttcttacagctacagggttctcatgcagact
ggtgatgctgagctggaaatgagaggaagatgcagtgctggtcagaaggtccttgcttcc
ctgatcatacgattagcattagctgagactttttgcctcaattgcggaatactagcattg
gatgaaccaaccacaaacttggatggtccaaacgcagaaagtcttgcagcagctctcctt
agaattatggaagacagaaaaggccaggaaaactttcaactaatagtaattactcacgat
gagcgttttgctcaacttattggtcaacggcagcacgcagaaaaatattatagggtcact
aaagatgatcatcagcacagtataattgaagcccaggagatttttgattga
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integrated database retrieval system
