Mangifera indica (mango): 123211911
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Entry
123211911 CDS
T07684
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
minc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123211911
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
123211911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123211911
04121 Ubiquitin system [BR:
minc04121
]
123211911
03400 DNA repair and recombination proteins [BR:
minc03400
]
123211911
Enzymes [BR:
minc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123211911
Spliceosome [BR:
minc03041
]
Complex B
Other components
Prp19 complex
123211911
Complex C
Prp19-CDC5 complex
123211911
Ubiquitin system [BR:
minc04121
]
Ubiquitin ligases (E3)
U-box type E3
123211911
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
123211911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
NBCH_WD40
WD40_like
Beta-prop_SCAP
Beta-prop_DCAF4
zf-Nse
WDR54
PAS_11
Beta-prop_DCAF12
V_ATPase_I_N
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
123211911
NCBI-ProteinID:
XP_044486818
LinkDB
All DBs
Position
3:23084138..23093034
Genome browser
AA seq
529 aa
AA seq
DB search
MNCSISGEVPEEPVVSKKSGLLFEKRLIERHISDFGKCPITGEPHAMDDIVPIKTGKIVK
PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARALLAEVDRQVMPMAASASLTSNASVLTNGKRALESEDSGPDGKKLRPGISSSII
TKLTDCNASLSQQRKKRQIPPSLSPADALERYTQLSSHPLHKTNKPGIVSIDIHYPKDVI
ATGGVDSNAILFDRSSGQILTTLSGHSKKVTSLKFVAEGDQLLTCSADKTVRLWQGSEEG
NYDCRHILRDHIAEVQAVTVHATNDYFVTASLDGTWCFYDISSGLCLTQVADNSGPEGRP
EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA
AYDGVKLWDLRKLKNFRSFEFNDSDTPTNSVDFDHSGSYLAIAGADIRIYQVASVKAEWN
CIKTFPDLSGTGKATCVKFGPDSKYIAVGSMDRNLRIFGLPSDDGSLES
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatctctggcgaggtgccggaagagcctgtcgtgtccaagaagtcgggt
ttactcttcgagaagcgcttaatcgagagacacatttcggattttggaaaatgcccaata
acaggagaaccacatgctatggacgatattgttccaatcaaaacaggaaaaattgtgaag
cccagacccttaacagctgctagcatcccagggatgctaggaatgttccagaatgaatgg
gatggtttgatgctatctaattttgctttggagcaacaacttcatacagctagacaagag
cttagtcatgccttataccaacatgatgctgcttgtcgagtgattgctagacttaaaaag
gaaagagatgaagcaagggcattacttgcagaggtcgataggcaagtaatgcccatggca
gcatcagcatcgcttacatccaatgcttctgtccttaccaatgggaaaagagctcttgaa
agtgaggattcgggccctgatgggaagaaattacgtcccggaatttcatctagcattatt
actaagctaacagattgtaatgcatctctttcacaacagcggaaaaaacggcagattcct
ccatctttgtctcctgctgatgctttagagaggtatacccagctttctagtcatcccctt
cacaaaacaaacaaacctggcattgtttctattgatatccattatcccaaggatgtcatt
gcaactggaggggttgattcaaatgctatactttttgaccgatcctcaggacagatctta
actactctgagtggtcattcaaagaaggttactagtctcaaatttgttgccgaaggtgac
caattattaacatgctcagcagataagactgttcgattgtggcaaggctctgaagaggga
aattatgattgtaggcatatcttgagggatcatattgcagaggtgcaagctgtaactgtc
catgccactaatgattactttgttactgcttctcttgatggcacatggtgcttctatgat
atttcctctggcttatgcttgacacaggttgcggacaactcagggcctgagggcagacct
gagggttatacatctgccgcttttcatcctgacggtctcatccttggaacaggcacctct
gaagctcttgttaagatttgggatgtgaaaagtcaggcaaatgttgcaaaatttgatgga
catgtgggggcagttactgcaatatctttctcagaaaatggttactaccttgcgactgca
gcttatgatggtgtaaaattgtgggatctgcggaagttgaagaacttccggtctttcgaa
tttaatgattcagatacaccaacaaattctgttgatttcgaccatagtgggtcttacctt
gcaattgcaggtgcagatataagaatctaccaagttgccagtgttaaagcagagtggaat
tgtatcaaaacttttcctgatttgtctggcacaggtaaggctacttgtgtgaaatttggt
ccagattcgaaatatattgcggtagggtcaatggatcgcaacctccgcatttttgggttg
cctagtgatgatggctcattggagtcataa
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