KEGG   Mangifera indica (mango): 123212090
Entry
123212090         CDS       T07684                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
minc  Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:minc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:minc03009]
    123212090
Ribosome biogenesis [BR:minc03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    123212090
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C NBCH_WD40 WDR55 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st PAC11 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR41 ASA1 Beta-prop_SCAP WD40_Gbeta DSE1_N Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st CFAP251_N Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_VPS8 WDR54 Beta-prop_IP5PC_F Beta-prop_HPS5 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 123212090
NCBI-ProteinID: XP_044487066
LinkDB
Position
3:3712355..3716087
AA seq 483 aa
MSEGSEALVVCSDRSLKVGMTIWDIETGDQILRIPSCAASPHGLLCLRNQYLAASQVNRH
GSLGGGSVFMWALNKPQPPLRSYTMEAMGPICCSNDGVYLAGGASSGNAYIWEVANGRLL
AMWRAHYKSLKCMVFSDDGSLLISGSDDGMICIWSMIRLMKKTSEMMHHSNHSESCLLEM
EDSGSETSLLHYSLEHKSSITGLLTVSSSHFVSCSLDATCKVWDLISGRLIQTQVYPLAL
TAILLDLVRLLMFVGSVDGRIFVNRLEFGIGLDDPIIVAEDESRMLKGHSEAITALTLSA
SYLISASEDRTVCLWDVSRRVIVRRFDHDKGPVTNLLVIPKFSLLSSSSHQKVSNKFRIS
LLDKYPQQDNFSKGMKTLLHSHFSRQDDEFCKIFQGTKSLDQYMCELQLEGTPAAMEMKV
ETSTDYRTWATRMTKHVMEMNKHLQSRLLDLMQCRLLRSREADLPATRNKKKLKIESLSP
SDE
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgagtgaaggaagtgaggcattggtggtttgtagtgataggagtttaaaagttgggatg
acaatttgggatattgaaaccggggatcagattcttcggataccgagttgtgctgcttct
ccccatggcttattgtgtttgagaaatcaatatcttgcagcttctcaggttaatagacat
ggctctcttggtggtggtagtgtcttcatgtgggcattaaataagcctcaaccaccactt
cgaagctacacaatggaagccatggggccaatttgttgctcaaatgatggtgtgtatctt
gctggtggtgcttcttcagggaatgcttatatctgggaggttgctaatggaagattactg
gctatgtggcgtgcccattataaatctttaaagtgcatggtcttttcagatgatggttcc
cttcttatttctggttcagatgatggtatgatctgcatttggtctatgattagattaatg
aagaaaacctctgaaatgatgcatcattccaatcattcagagagttgcttgttggaaatg
gaagattctggcagtgaaacttctttgttacattattcattggagcataagtcctccatt
accggtttgctaactgtatctagctcacattttgtatcttgctcccttgatgcaacatgc
aaggtttgggatttaatctcaggaaggcttatacaaacacaagtttatcctctagcttta
actgcaattcttcttgatctggtacggctgctcatgtttgtaggcagtgttgatgggaga
atatttgttaacaggcttgaatttgggataggactggatgaccctataattgttgcagaa
gatgagtctcgcatgcttaaaggacacagtgaagcaataactgcattgaccttgagtgca
tcctatctgatatcagcatcagaagatagaactgtctgtctctgggatgtcagtcgtagg
gtgatcgttcgaagattcgaccatgataaaggaccggtaactaatctgttagtgattcca
aagttctcactactttcatcgtcaagccatcaaaaagtgtccaataagttccgcatttct
ctgctggataagtatcctcagcaagataacttttcaaagggaatgaaaaccctcctccat
tcacatttttctagacaagatgatgaattctgcaaaattttccaaggaaccaagtcacta
gatcagtatatgtgtgaactgcagctagaaggaacacctgctgccatggaaatgaaagtg
gaaacaagcacagattatcggacatgggccacaagaatgaccaagcatgtgatggagatg
aataagcatttgcaatctcgactgctggaccttatgcaatgccgattgttaaggtccaga
gaagctgacttacccgcaaccagaaacaaaaagaagctcaagatagaaagcctatcaccc
agtgatgagtag

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