Mangifera indica (mango): 123213001
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Entry
123213001 CDS
T07684
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123213001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123213001
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123213001
mRNA degradation factors
5'-3' decay
Decapping complex
123213001
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
123213001
NCBI-ProteinID:
XP_044488237
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Position
4:complement(15985716..15992267)
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AA seq
797 aa
AA seq
DB search
MERPGDKDFHLFAHYSSSSSSSTSTGNALFDASQYEFFGQNIGEEVELRGLEDDRDDAPV
FGSVDDEYHLFDKGDGFGAIPDVDDMTTTFAKLNRVVAGPRNPGVIGDRSGSFSRESSSA
TDWAQDGEFGSWFDQQIFDTENSEEGKRWSSQPQSSSARFLESESKPLYRTSTYPQEQPL
HHFSSEPILVPNSSFTSFPPPGSTSQHASPCHLNIPSAGGSQSPFSAPNLSPLSNPNNRQ
AGLSHGLHGGGSLSQLTSPGVSLKNRPQNHWVSRAGLLHGDHSSLIHNILQQQLAYQNST
MSPQLVSAQQHLQQQRLHHQVQPSLARFAALQSQLYSSHPSLKLMHGLSDIREQKPKASQ
RGRHSVRHSQGSENSSQKTDNGWIQFRSKYMTADEIESILKMQHVATHSSDPYIDDYYHQ
ARLAKKSSGLRMKNHFFPSHLKELPSRNRNSVEHHLHADAHGRIPLSSIRRLRPLLDVEP
TSGLGDETGEQKASEKSLEQEPMLAARITIEDGLCLLLDIDDIDRFLQFGQPQDGGAQLR
QKRQILLEGLAASLQLVDPFGKSGQTVGLAMKDDIVFLRLVSLAKGRQLFIKFLQLSFPG
SELTRIVCMAIFRHLRFLFGGLPSDPSAALTTTNLAKTVCACVNGMDLRALSACLIAVVC
SSEQPPLRPLGSPAGDCATVILISVLERASELQSHAAGSIRNLDLWHASFDSFFDLLTNY
CMSKYATIKQSQLSTEVKDSDAIKREMPRELLRASLPHTNEEQLNSLRNFANQCEPNAGS
IACASRGGQIISESVRG
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggagagaccgggtgacaaagatttccatctcttcgctcactactcctcctcctcctcc
tcctccacctccactggaaatgcactatttgatgcatcacaatatgaattttttggtcaa
aatattggggaggaagtggaattgaggggactggaggatgatcgagatgacgctcctgtg
tttggatctgttgacgatgagtatcatttgtttgataaaggagatggttttggagcaata
cctgatgtggatgatatgacgactacttttgcaaagttgaacagagttgtcgcaggacca
agaaatccaggtgtcattggtgacagatctggatcattttcaagggagagttcatctgct
actgactgggcacaagatggagaatttgggagctggtttgatcagcaaatttttgatact
gaaaattctgaagaaggaaagagatggtcatcacaaccacaatcttcttctgctcgtttt
ctggaatcagaatcaaaacccttgtacagaacatccacttatccccaggagcaaccgctg
catcacttctctagtgaaccaattcttgtgcccaattcaagtttcacgtcatttcctcct
cctggtagtacatctcagcacgcttcaccatgtcatctgaatattccttctgctggtggc
tctcagtcacccttctctgcaccaaatctttctcctctatccaaccctaacaatcgtcag
gctggcttatctcatgggttacatggtggtggaagtttgtctcagttgacatctcctggt
gtttctcttaaaaaccggccacaaaatcactgggttagtcgtgcaggcttattgcatgga
gaccactctagtctcatacacaacatattgcaacaacagttagcctaccaaaatagcaca
atgtctccacaattagtgtcagcgcagcaacatctacaacagcagagattgcaccatcaa
gttcaaccatctttggcccgctttgcagctttgcaatcgcaactatacagttcacatcct
tcactcaaattgatgcatggattgtctgatattagggagcaaaagccaaaagcttctcaa
agaggcagacatagtgtgcgccattcccaaggctctgagaatagtagccagaagactgat
aacgggtggatacaattcaggtccaagtatatgacagctgacgagatagagagtattctt
aaaatgcagcacgtggcaacgcatagcagtgatccatacatagatgattattaccaccaa
gctcggcttgcaaaaaaatcttctggattgaggatgaaaaatcattttttcccttcacac
ctgaaggagctgccatctcgaaaccgcaacagtgtggagcatcaccttcacgctgatgct
catgggagaattcccctatcttccatacgtaggctgcgtccgctccttgatgttgaacct
acttctggtcttggtgatgaaactggtgaacaaaaagcctctgagaagtctctggaacag
gagccaatgctggcagctagaatcaccattgaagatggtctttgtcttcttcttgatatt
gatgacattgaccggttcctacagtttggtcagcctcaggatggtggggctcagcttagg
cagaagcggcagatactgctagaaggattggcagcctcacttcagcttgttgatccattt
gggaaaagtggccagacagttgggctagccatgaaggatgatattgtgtttctaaggttg
gtttctcttgctaaaggtcgacagcttttcatcaaatttcttcagctttcattccctggc
agtgagctcacccgaatcgtgtgtatggctattttccgtcatttgaggtttttatttggt
ggccttccttctgatccctcagcagctctgacaactactaatcttgcaaagacagtttgt
gcatgtgttaatggcatggatcttcgtgcacttagtgcatgccttattgcagttgtttgt
tcctcagagcagccaccgctccgccctcttggcagcccggcgggggattgtgccactgtt
attttaatatcagttcttgaaagagcaagtgaactgcaatcccatgctgctggtagcata
cgtaaccttgacctatggcatgcttcatttgacagtttttttgaccttcttaccaattat
tgcatgagtaagtatgcaactataaagcaatcccagttgagcacagaagtaaaagattca
gatgctataaagcgggaaatgcccagggagcttctccgtgctagtctgcctcacactaat
gaggaacagctgaattctttaagaaattttgccaaccaatgcgagcccaatgcagggtct
attgcctgtgctagtcgtggtggtcaaataatctctgagtcagtgcgaggttaa
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