KEGG   Mangifera indica (mango): 123213020
Entry
123213020         CDS       T07684                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
minc  Mangifera indica (mango)
Pathway
minc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:minc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    123213020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:minc03019]
    123213020
   03036 Chromosome and associated proteins [BR:minc03036]
    123213020
Messenger RNA biogenesis [BR:minc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     123213020
Chromosome and associated proteins [BR:minc03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     123213020
    COMPASS/SET1 complex (yeast)
     123213020
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WD40 Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd ANAPC4_WD40 NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Beta-prop_VPS8 KNTC1_N Beta-prop_WDR35_TULP_N DUF5812
Other DBs
NCBI-GeneID: 123213020
NCBI-ProteinID: XP_044488273
LinkDB
Position
4:15773745..15776961
AA seq 332 aa
MVGTQSERDDKVSLELSEEILQSMEVGMAFRDYIGRISSMDFHKTSGFLVTASDDESIRL
YDVSTATCLKTINSKKYGVDLVCFTAQPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAVAF
GGYIRMFDARKYEKGPFEIFSVGGDVSDANVVQFSNDGRLMLLTTMGGHIHVLDSFRGTL
LSTYNVKPVSSNSTLEASFSPEGMFVVSGSGDGSVYAWSVRSGKEVASWMSTENEPPVIK
WAPGNLMFATGSSELSFWIPDLSKLGAYVGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggttgggactcaatcggagagagatgacaaggtctcgttggaactcagtgaagagatt
cttcaaagcatggaagtgggcatggcgttcagagattatattgggagaatcagctcaatg
gactttcataaaacttcaggtttcttggtgactgctagtgatgatgaatccattcgtctg
tatgatgttagcactgctacatgtttgaagactattaatagcaaaaagtatggggtggat
cttgtttgcttcactgcccagcctacaacagtaatatactcatcaaaaaatggttgggat
gaatccttgcgacttctttccttgcatgacaacaagtacttgcggtatttcaaaggtcac
catgacagggttgtttcacttagcttgtgctcccgcaaagagtgctttatctcaggttct
ctggatcgaacagttttgctttgggatcaacgggctgagaagtgtcagggtcttttacgc
gtgcaaggaaggcctgctacagcatatgatgatcaagggcttgtctttgctgtagctttt
ggaggatacataagaatgtttgatgctcgaaagtatgagaagggtccttttgaaatcttc
tctgttggtggagatgtatcagatgcaaatgttgtgcagttcagcaatgatgggagactt
atgcttctaacaactatgggtggacatattcatgtgcttgattctttccgtggcacactt
ttgtctacatacaatgtgaagccagtttcgagcaattccacattggaggcatctttcagc
cctgagggaatgtttgttgtatcaggttctggtgatggtagtgtttatgcatggagtgtg
cggagtgggaaagaagttgcaagttggatgagtactgaaaatgagcctcctgtcataaaa
tgggcgcctggaaatctaatgtttgctactggttcatcagagctatcattttggattcct
gatttatctaaattgggagcttatgttggaaggaagtaa

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