Mangifera indica (mango): 123213103
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Entry
123213103 CDS
T07684
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
minc
Mangifera indica (mango)
Pathway
minc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123213103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123213103
03036 Chromosome and associated proteins [BR:
minc03036
]
123213103
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123213103
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123213103
PBAF complex
123213103
GBAF(ncBAF) complex
123213103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
123213103
NCBI-ProteinID:
XP_044488395
LinkDB
All DBs
Position
4:complement(11741818..11747988)
Genome browser
AA seq
1033 aa
AA seq
DB search
MEEKRREAGCQPAAASSASVGVESPVSEPASSRRRAGGQKRKAAALSTGNSSSTSSKRIS
RDKNSVSHTPIYNHNGPLTRARQGPSSLSASAGGTLEAARDDTKLEVVDELNKYGEQWEA
LEAKIETDFEAIRSRGCNVHVVPTHCGWFSWSRIHPLEEHALPSFFNGKSQNRTPDMYME
IRNWIMKKFHANPSTQIELKDLSELEVGCVDDRQEIMEFLDYWGLVNFHPFPPESTATSA
EGDKVANADGEMAANTDDDGAAKKESLLEELYHFDEIQLCPRVAPKPKLISPADPSRLFP
ESAIAEDLAKPEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNDGKFGSGMSSSD
FILMVPAEAAGLSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAECILHFVQMPI
EDVFFYHDVGADAISKETADVAAMNNDTSTPKDAPETSESKTGANDGQTQTSPIETSKSE
DATSMKTCQETSKPEDANKVESAKKMLKSEDTNEVKVQKTGENIALKALREAFEAVGYHP
PESPHSFAEVGNPVMALAAFLSLLVRPDVATASTRGSLKSISSNSPAMQLAARHSFVLED
PPGDKKEPIQSESVVTEIANQDTQKDDNPVDRKQKEKDTTTMLDKKILSNDHDSKITEDS
VPEEKRTSASSNDKSTKELNVVKEPSTKGIPEKVEPGDLNKSSNQELPKENQPNIVEERN
HLSSKNAPSSVKEAGEGNSVGEPSVSVQIAKDVELSFDSLPLERSEAGLLSNSNVESQPS
KARKDVDMVSNSLPSESIEPEQPVASSSKAEPSQIAETPKDVDMMSNSLPLESNEPQQTH
SIIENGTTAVEDQTKDGQEEKHDHGETKGECNIDKLKHAAVTALSAAAVKAKLLANQEED
HIRQLATSLIEKQLQKLEAKLAFFNEMDNMTLRVREQLERSRQRLYHERAQIIAARLGSS
RPMPPSIPANRIPPNFANSVVRPPMSMTSLRPPMSRPLGTAGPTLSSSFASTTVAGSSIR
PSNQDKLSSVGMK
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaagcgccgggaagccgggtgtcaaccggcggctgcaagctctgccagtgtc
ggggttgagtcaccagtatcagagccagcttcgtcccggcgtcgagcaggagggcagaaa
aggaaagccgcggcgctctcaacaggcaactcgtcttcaacgtcatcgaaacgaattagt
cgcgacaagaactcagtttctcacaccccgatctacaaccacaacgggccgttgacgaga
gctcgccagggtcctagcagtctcagtgcatcggctggaggaacgctcgaagcggcacgt
gatgacacgaagctggaggtggttgatgaactgaacaaatatggtgaacagtgggaggct
ttggaggcgaaaatcgagactgattttgaggcgatcagatctcgcggttgtaatgttcat
gtggtgcctacacattgtggttggttttcgtggtcaagaattcatcctcttgaggagcat
gcattgccttcttttttcaatgggaagtcccagaaccgaactcctgatatgtatatggag
atacggaattggattatgaagaagttccatgcaaatccaagcactcaaattgaattaaaa
gacttgtcagaacttgaagttggatgtgtggatgataggcaggagataatggagttcttg
gactactggggcttagtcaatttccatccattccctcccgaatccactgccacaagtgct
gaaggtgataaagtggcaaatgctgatggtgagatggcagcaaatactgacgatgatgga
gcagcaaaaaaggagtctttgcttgaagaattgtatcactttgatgaaattcaattatgt
cctcgtgttgctccaaagcctaagctaatatctcctgctgacccatcgcggttgtttcca
gagtctgcaattgctgaagatttagcgaagcctgagggcccatctgttgagtaccattgc
aactcttgttcggctgattgctctcgtaagcgctatcattgccaaaagcaggcagatttt
gatctatgcactgattgcttcaatgatgggaagtttggctctgggatgtcgtcatcggat
tttattctcatggtgcctgctgaagctgctggtttgagtggtgggaagtggacagatcag
gagacccttctcctcctcgaagcattggaactttataaagagaactggaatgagattgca
gaacatgttgccactaaaacaaaagctgaatgtatattgcactttgttcaaatgccgatt
gaggatgtgtttttttatcatgatgttggtgctgatgccatatctaaggaaactgcagat
gttgccgcaatgaataatgatacatctacccctaaagatgctcctgaaacatcagaaagt
aaaacaggtgcaaatgacggtcagacccaaacttcaccaattgaaacttcaaaatcagag
gatgcaacttctatgaaaacatgtcaggaaacttcaaaacctgaagatgcaaataaagtt
gaatctgctaagaaaatgttaaaatcagaagacaccaatgaagtgaaagttcagaagact
ggtgaaaacattgcattgaaggcccttagggaagcatttgaagctgttggttatcatcca
cctgaaagcccacattcctttgctgaagttggaaaccctgtcatggcattggcagcattc
ttgtcactgttggtgaggcctgatgttgctactgcttctactcgtggttctttgaaatca
atatctagcaattctccagccatgcagttggctgcaaggcacagctttgttttggaagat
cccccgggtgacaagaaggagccaattcagtccgagagtgttgttactgaaattgccaat
caagatactcaaaaagatgataacccagtagacagaaagcaaaaagagaaagacactaca
actatgctggacaaaaaaatattgtcaaatgatcatgacagcaagataactgaagattct
gttccagaagaaaagagaacatcagcctcttcaaatgataaatccaccaaggaattaaat
gttgtaaaagaaccaagcaccaaaggtattcctgaaaaagttgaacctggtgatttaaat
aaatcaagcaatcaagaattacccaaggaaaatcaaccaaacattgtggaggaaagaaat
catttatcatctaagaatgctccaagctctgtgaaagaggctggagagggaaattcagtc
ggagagccttctgtgtcggtacagatagccaaggatgttgaattgtcttttgattctctt
ccattggaaaggagtgaggctggtcttctatcaaattcaaatgtagaatctcaaccttcc
aaggcaagaaaggatgttgatatggtttctaattctcttccttcggagagtattgaacct
gagcaaccggttgcatcaagttccaaagctgagccctctcaaattgcggaaacaccaaag
gatgtggatatgatgtctaattcactgcccttggaatcaaatgagcctcaacagacacat
tcaattattgaaaatggaacgactgcagttgaggatcaaactaaagatggtcaagaagag
aagcatgaccatggagagacaaaaggtgaatgtaatattgataaactaaagcatgcagca
gttactgcactctctgctgcagcagttaaggcaaaacttcttgctaatcaggaagaggat
catattcgacagcttgctacatcattgatagaaaagcagttacaaaagttagaagccaag
ttagctttctttaatgaaatggataacatgactttgagggttagagagcaattggagagg
tcaagacagaggctttatcatgaacgagctcaaataattgcagctcgacttggctcttct
agaccaatgccaccatcaatacctgccaacagaatcccaccgaactttgctaactcagtt
gtaagacctcctatgagcatgacttccctacggccaccaatgtcaagacccttggggact
gcaggtcctaccctttctagctcatttgcctcaacaacagtggcaggaagttcaattcgg
ccttcgaatcaggacaaactttcttctgttggaatgaaatag
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