Mangifera indica (mango): 123213502
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Entry
123213502 CDS
T07684
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
minc03015
mRNA surveillance pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123213502
09122 Translation
03013 Nucleocytoplasmic transport
123213502
03015 mRNA surveillance pathway
123213502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123213502
03041 Spliceosome [BR:
minc03041
]
123213502
03009 Ribosome biogenesis [BR:
minc03009
]
123213502
03012 Translation factors [BR:
minc03012
]
123213502
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123213502
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123213502
mRNA cycle factors
Stress granule specific factors
123213502
Spliceosome [BR:
minc03041
]
Complex C
Other components
EJC/TREX
123213502
Ribosome biogenesis [BR:
minc03009
]
Eukaryotic type
90S particles
Helicases
123213502
Translation factors [BR:
minc03012
]
Eukaryotic type
Initiation factors
eIF-4
123213502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123213502
NCBI-ProteinID:
XP_044488882
LinkDB
All DBs
Position
4:complement(17609900..17614150)
Genome browser
AA seq
412 aa
AA seq
DB search
MAAAAAMQTSRGGGLRRGAGGMEEDKMVFETTEGVEAITSFDGMGIKDDLLRGIYQYGFE
KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQMVDTASREVQALILSPTRELA
SQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLENGVHIVSGTPGRVCDMIKRRTLRTR
AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI
LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG
YNFTVSSMHGDMPQRERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRE
LYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagccgcagcgatgcagacgagccgcggtggcgggttgaggaggggagccggg
ggaatggaggaagacaagatggtgtttgaaacgacggaaggagtggaggcaatcacgagt
ttcgatgggatgggaataaaggacgatctgttacgtggaatttatcagtacggattcgag
aagccctcggccatacaacagagagccgtcatgcctataatcaagggcagagatgtaatt
gcccaggctcagtctggtaccggcaagacctctatgattgctctcactgtttgccagatg
gtcgacacggcttccagagaggtccaggctttgattttgtcacctacaagggaattggcg
tctcagacggagaaggtgatcctggcaattggtgatttcataaatatacaagcccatgct
tgcattggaggcaaaagtgttggtgaggatattagaaagctagagaatggagtccatatt
gtatctggaactccaggcagagtctgtgatatgatcaagaggagaacattgcgtactaga
gctattaaattattagtgcttgatgaatccgatgagatgttgagcagagggttcaaggat
caaatttatgatgtgtaccgatatcttccaccagaccttcaggttgtcttgatatctgct
acacttcctcatgaaatcttggagatgaccaccaagtttatgacagatcctgtaaagatt
cttgtgaagcgtgatgagttgactttggagggaatcaagcaattttttgtggcagtggaa
agagaggagtggaagtttgacacactatgtgatctctatgatacccttacaattacacaa
gctgttattttctgcaacacaaagcgaaaggtggattggctaacggagaagatgcgaggc
tacaattttactgtctcgtcaatgcatggagacatgcctcagagagaaagagatgcaatt
atggcagaatttcgctctggtacaacccgtgtccttattacaacagatgtatgggctcga
ggacttgatgttcaacaggtttctctcgtgataaattatgaccttccaaacaatcgtgag
ctctatatccatcgcattggacgttctggtcgttttgggcgcaagggtgtagctataaat
tttgtgaaaaatgatgatatcaagattcttagagatatagagcagtattacagtactcag
attgatgagatgccaatgaacgttgctgatcttatataa
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