Mangifera indica (mango): 123213873
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Entry
123213873 CDS
T07684
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123213873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123213873
Spliceosome [BR:
minc03041
]
Complex A
U1 snRNP components
U1 related factors
123213873
Complex B
123213873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
SMODS
Motif
Other DBs
NCBI-GeneID:
123213873
NCBI-ProteinID:
XP_044489433
LinkDB
All DBs
Position
4:complement(14716163..14731287)
Genome browser
AA seq
1022 aa
AA seq
DB search
MAEMANNAQYSSVQMPHQPPAAGSMDPPRGFVPPIPLQFRPLVPAPQPQQFIPLASQHFQ
PVGQSVPLMNAGLPPQTPQPQFPPLMQQLPARPVPPVPSHLPPPPQAMSLPNSQPNVQAP
SLYPPGLGTLGRPLPVSYAFAPSSYGQPQMTVNVSAGTQYQPLSQMHTSSNSAGGQTGLS
GSQNSVSVAPLQQAHEQPAITTTPVPASPVKPKPTEGVPTDWIEHSSADGRRYYFNKRTR
QSTWDKPFELMTPIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSIPNELKMAREQAEK
LPMKGTMPEASANSQVLASIPSSVVQAPSSVDNSSCSIQEVASSPVAVAPVVAVGDIQPA
AAAGSSELPVVASPVLANADGVQTTIDSIAPATTVSGSEGVSVPVNTIVEMMNNSSNLSA
QDVVTSADEGLAQDKEETRKDVVAVEKVHDSLEEKTIEQEHLTYANKLEAKNAFKALLES
AHVGSDWTWDQAMRVIINDRRYGALRTLGERKQAFNEFLGQRKKQEAEERRSKVKKARDD
YKKMLEESLELTSSTRWSKAVTMFENDERFKALERERDRKDLFDNHLEELKQKERVKAQE
ERKRNVIEYRKFLESCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYLHDLEKE
EEEQRKIQKEELRKAERKNRDEFRKLMEDHVTAGTLTAKSHWRDYCMKVKDLPAYIAVAS
NTSGSTPKDLFEDVAEELQKQYQEDKTRIKGAVKLKRITLLPTWSFEDFKASILEDVTSP
PISDVNLKLAFDELLERVKEKEEKEAKKRKRLADEFFDLLCSIKEISATSTWENCLQLIE
SSREFSSIGDESICRGVFDEYVAQLKEQAKEVVRKRKEEKERKEKEREERDRRKVKQGRE
KERGLEREKDDHLKKDGTDDENVDTEIHFFSEKKSGKDNDKKHRKRHQSSQDNLNENEKD
RSKNSHRHNNDRKKSRRRASTPESEDESRHKRHKRDQRNASRRNVDHEDLEDGEFGWEGE
SR
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaatggccaataatgctcaatattccagtgtacagatgcctcatcaacctcca
gcagctggctctatggatcctcctcgaggttttgttccacctatcccacttcagttccgg
cctttggttccagcaccacagccacaacagtttataccactggcttctcagcattttcag
ccagttggacaaagtgtccctctaatgaatgctggattgccacctcaaactccacagccc
cagtttccgccattgatgcaacagctgccagcaagacctgtcccgccagtgcctagccat
cttccaccaccgccacaggcaatgtcattgccaaattctcagcctaatgtgcaagctccc
agtctctacccacctggtttgggtacactaggaagacctctccctgtatcatatgctttt
gcaccatcttcatatggtcaacctcaaatgactgtcaatgttagtgctgggactcagtat
cagcctctgtctcaaatgcatacttcaagtaattctgctggagggcaaacgggtttgtct
ggtagccagaacagtgtttctgttgcacctctgcagcaagctcatgaacaacctgccatt
accaccacccctgtaccggcatctcctgttaagcctaagcctactgaaggagtcccaact
gattggatagagcattcttctgccgatgggagaagatattacttcaacaagaggactaga
caatctacttgggataagccatttgaattgatgactcccattgagagggctgatgcatca
actgactggaaggaatttactagtcctgatggaagaaagtattactacaacaaagttacc
aagcaatcaaaatggtcaataccaaatgagttgaagatggcccgtgaacaagcagaaaag
cttcccatgaaaggaacaatgccagaagcatctgctaattctcaagtactagcttctatt
ccttcctccgtggttcaagcaccatctagtgttgataactcctcttgctctattcaagag
gtagcatccagcccagtggctgttgcaccagttgttgctgttggcgacatacaacctgca
gcagctgctggatcatcagaattacccgttgtagcttctcctgtcttagccaatgcagat
ggagttcagacaactatagattctattgcaccagcaacaactgtttctgggagtgaggga
gtttctgtacctgtcaatacaattgtggaaatgatgaataattccagcaacttgtcagct
caggatgttgttacttctgcagacgaaggccttgcacaagataaagaagaaaccaggaaa
gatgtggtggcagttgaaaaggttcacgattcattggaagagaagacaattgagcaggag
cacttaacttatgccaataagctggaggctaagaatgcatttaaagcacttttggagtct
gcacatgttgggtctgactggacttgggatcaggcaatgagagtaataattaatgacaga
agatatggtgcactaagaacacttggggagcgaaagcaagcttttaatgagttcttaggt
caaaggaaaaaacaggaagctgaggaaagacgaagtaaagtgaaaaaagcacgggatgat
tataaaaagatgttagaagagtctctagagctaacatcatctacaagatggagcaaagca
gtgaccatgtttgaaaatgatgagcgtttcaaagctcttgaacgagaaagagatcgcaag
gatctgtttgataatcatttggaggagctcaaacagaaggaacgagtaaaggcacaggag
gagcgcaagcggaatgtaatagagtataggaaatttttggaatcatgtgacttcattaag
gcaagcagccagtggcgaaaagttcaagaccgcttagaggctgatgaaagatgttcacgt
cttgagaaaattgatcgactggaaatttttcaggaatatttacatgatttagagaaggaa
gaggaggaacaaaggaaaatacagaaggaagaattgagaaaggctgagcgcaaaaatcgt
gatgagtttcgcaagttgatggaagaccatgttactgctggcactcttacagccaaatca
cattggcgtgactattgcatgaaggttaaagatttacccgcatacatagcagtcgcatca
aatacctcaggatcaacaccaaaggatttgtttgaagatgttgctgaagagttgcagaaa
cagtatcaagaagacaaaactagaataaagggtgcagtgaagttgaaaaggatcactttg
ttaccaacttggtcatttgaagattttaaggcttctattttggaggatgttacctctcct
cctatatcagatgtcaacttaaagctagcatttgatgagctgttggaaagagtcaaggag
aaggaagagaaagaagctaagaaacgtaaacgtctagcagatgaattttttgatctactg
tgttccatcaaggaaatatctgcaacttcaacatgggagaattgcttacaacttattgag
agtagccgagaattcagttcaattggagatgagagcatttgcaggggggtttttgatgaa
tatgtagcacagctgaaagagcaggcaaaagaagtagtacggaaaagaaaggaagagaag
gaaaggaaggagaaagaaagagaagaaagagataggaggaaagtgaagcagggaagggaa
aaggagagaggattggaaagagaaaaagacgatcacttaaagaaggatggaacagacgat
gaaaatgttgacactgaaattcatttcttcagtgagaaaaaatcgggaaaagacaatgat
aagaaacaccggaagcggcatcaaagttcccaggataacttgaatgaaaatgagaaagat
cgatctaagaactctcacaggcataacaatgatcgcaaaaagtcaagacggcgtgcatca
acacctgaatcagaggatgagagcagacataaaagacataagagagaccaacgtaatgct
tcccgcagaaatgtcgatcatgaagaccttgaggatggggaatttggttgggagggtgaa
agtcggtag
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