Mangifera indica (mango): 123213995
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Entry
123213995 CDS
T07684
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
minc
Mangifera indica (mango)
Pathway
minc03410
Base excision repair
minc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
123213995
03450 Non-homologous end-joining
123213995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
minc03400
]
123213995
Enzymes [BR:
minc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
123213995
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
123213995
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
123213995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
BRCT
HHH_5
PTCB-BRCT
NTP_transf_2
Cdd1
BRCT_2
Motif
Other DBs
NCBI-GeneID:
123213995
NCBI-ProteinID:
XP_044489597
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Position
4:complement(17132303..17138199)
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AA seq
538 aa
AA seq
DB search
MAPKATKNRTPSIDPNGIFNGMSVFLVENRVQSRRLQIWKQKLVQMGATIEERLSKKVTH
VFAMDLEALLQQIDRESLARFKGRVIHYQWLEDSLRLGKKVHEDLYILKLDSEADNMADK
SSDHKQESGNATGDNEPSLLKKIKFSSDDVEIFKAESWGDVEINAPHETPNSSTSSDSLS
HNPSAANSSPDSTKSHNQDPSLLYSPPDLNKNITEIFGKLINIYRALGDNRRSFSYHKAV
AVIEKLPFKIESTDQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFETDEKVRTISLFGEV
WGIGPATALKLYDKGHRSLDDLKNEDSLTHSQKLGLKYFDDIKTRIPRHEVQEMELLLQK
VGEDILPGVVILCGGSYRRGKASCGDLDIVITHPDRKSHKGFLSRYVKQLKDMKFLREDL
VFTTHSEEGADSGVDTYFGLCTYPRRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR
LLAESKGYRLDDTGLFPATRGSGGKHGARASASLKLETEKEVFDFLGFPWLEPNERNL
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaaggcaaccaaaaacagaactccgtctatcgaccccaacggaatcttcaac
ggaatgtccgttttcctagtcgaaaacagagttcagagtcgtcgattgcagatatggaaa
cagaagctggtgcaaatgggagctactattgaggagcgtctatcaaagaaagttactcat
gtttttgctatggatttagaagctcttcttcaacaaattgatagagaaagcttagctcgc
tttaaaggaagagttatacattatcaatggcttgaggacagcttgagattagggaaaaaa
gtccatgaggatctatacattttaaaattggattcggaagcagataatatggcagacaag
tcttcggatcataaacaagagagtggaaatgctactggtgataatgaaccatcacttctc
aaaaaaataaaattttctagtgacgatgtggagatcttcaaagcagaaagctggggagat
gtggaaattaatgctccccacgagacaccaaatagttccacaagttctgatagtttgtct
cacaatccaagtgcagcaaatagcagtcctgattccaccaaaagccataatcaggatcca
tccttgctgtacagtcctcctgatttaaacaaaaatattactgagatatttggaaaactt
atcaacatatatagagcattgggtgataatagaaggtcatttagctatcataaggctgtc
gcagttattgagaagttgccatttaaaatagagagtacagatcaggtcaaaggtctgcca
ggaattgggaagtcaatgcaggatcatattcaggagattgttactactgggaaactatca
aagttggagcactttgagacagatgaaaaggtgaggacgatcagtttgtttggggaagtt
tggggtattggtccagccactgcactgaaattatatgataaaggacaccgttcactagat
gatttgaagaatgaggattcattaacacattcacaaaaactagggctgaaatattttgat
gatatcaagacaaggattccacgccatgaggttcaagagatggaacttcttctgcaaaaa
gtgggggaagatattttgcctggggttgtaattttatgtgggggatcatatagacgtgga
aaggcttcctgtggagatcttgatattgtaattacacatcctgatagaaaaagtcataag
ggatttttgtcaagatatgtgaagcagttaaaagatatgaagttcttgagagaggatttg
gtcttcactactcacagtgaggagggtgcagattcaggtgttgacacttactttggtctt
tgcacatatcccagacgagagctacgacaccgcatagatttcaaggtatatccaagggac
atatatgcatttggactaatagcatggactggaaatgatgtactgaataggaggttgaga
ttgcttgccgaatccaaaggataccgacttgatgatactggtctttttccagctactcgt
ggctcaggtggtaaacatggtgcaagggctagtgcaagtttgaaattggagactgagaaa
gaggtgtttgatttcctggggtttccttggcttgaaccaaacgaaagaaatttatga
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