Mangifera indica (mango): 123214052
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Entry
123214052 CDS
T07684
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123214052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123214052
03012 Translation factors [BR:
minc03012
]
123214052
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123214052
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123214052
Translation factors [BR:
minc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123214052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
T2SSE
NACHT
AAA_11
Myosin_head
Motif
Other DBs
NCBI-GeneID:
123214052
NCBI-ProteinID:
XP_044489684
LinkDB
All DBs
Position
4:1120899..1135967
Genome browser
AA seq
1184 aa
AA seq
DB search
MPLLSPLFQIPPKLIMKDRPPPSYGAVYVPPHQRLRSVIASRASIPSLPHLPALQQQNNN
NFSNNHNKNINDDNKKRLKYNSGSAYSGVSEEGSDRELDTWLLPGAYPSDNVEEWRRKLT
AFLCDKSKQELISREKKDRCDFEQLSALASGMGLYSHLYAKVVVFSKVPLPNYRFDLDDR
RPQREVTLSLGLLRRIDYYLGEYFSQKYRNKGSFVDLSVSRSSSSSSLATEEGLFEQPDQ
SVSSNSVMDKILQRRSLQLRDQQQAWQESPDGRKMLEFRRSLPAYKEKDAILTAISQNQV
IIISGETGCGKTTQIPQFIFESEIESVRGAVCSVICTQPRRISAISVSERVASERGETLG
ESVGYKVRLEGVKGKDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLI
VLKDLLPRRPELKLILMSAKLDAELFLSYFGGAMIIHIPGFTYPVRTHFLENILEVTGYR
LTPFNQIDDYGEEKMWKMSKQAPRKRKSQIASLVEDALRVANFKEYSPQTKESLSCWNPD
CIGFNLIEYLLCHICEKERPGAVLVFMTGWDDINSLKDKLQAHPILGDSSRVLLLTCHGS
MASSEQSLIFDEPEGGVRKIVLTTNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLL
PSWISKVSAQQRRGRAGRVQPGECYHLYPRSVYDAFAEYQLPEILRTPLQSLCLQIKSLK
LGSISEFLSRALQSPELLAVQNAIEYLKITGALDQNEDLTVLGRYLTMLPMEPKLGKMLI
LGAIFKCLEPVLTIVAGLNVRDPFLAPVDKKDLAEAAKSQFSCDHSDHLALVRAYEGWKD
AERDLAGYEYCWKNFLSFQSMKAIDSLRDEFFSLLRDTGLVDCNTTICNAWSYDDHLVRA
VICYGLYPGICSVVNNVKSFSLKTMEDGHVLLYSNSINARQPEIPYPWLVFNEKIKVNSI
FLRDSTAICDSVLLLFGGSISQGNTDGGHLKMMGGYLEFFMEPALSDMYQCLRRELDELI
QNKLLNPRMEMHMYRDLLSAVRLLVSEDRCEGRFVFGRQVLKSLKSSPVPLQPALIPRTE
SGPGGDNPKSQLQTLLTRAGYAAPSYKSRQLKNNQFLATVEFNGIQIMGRPCNNKKSAEK
DAAAEALQWLMGGTQTSLECINQMSLLLKKARRITSESAPPSSS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgccccttctctctccactttttcaaatccctcccaaactcatcatgaaggatcggcct
cccccgtcctacggcgccgtttacgttcctcctcaccaacgtctccgctcggtcatcgcc
agtcgcgcctcaattccttcgcttcctcacttaccagcactacaacaacaaaataataat
aatttcagtaataatcataataaaaatattaatgatgataataaaaagagactgaagtat
aactcaggttcagcgtacagtggagtatccgaggaaggctctgatcgggagctggatacg
tggctgctaccgggtgcttacccctctgataatgtggaggagtggagaaggaagttgact
gcgtttttatgtgacaagtcaaagcaagagttgatctcaagggagaaaaaggatagatgt
gattttgagcaactgtcagctctggctagtggcatgggtttgtatagtcatctgtacgca
aaagttgttgtctttagtaaggtcccactgccaaactacagatttgatttagatgatagg
cggccacagagggaggtgaccttatcccttgggttgctcagacgaattgattactatctt
ggagaatacttctctcaaaagtataggaataagggaagttttgtggatctatccgtctca
aggtctagcagtagtagtagtcttgctactgaagaaggtctttttgaacaaccagatcaa
tcagtatccagtaattctgtcatggataaaattttgcagcgacgaagtttacaactgcgt
gatcagcagcaagcttggcaggaatctccagatggtagaaaaatgcttgaatttcgaaga
agtctccctgcttataaggagaaggacgctattctgacagccatttcacaaaatcaggtc
ataattatatcaggtgaaactggctgtggcaagaccacacaaattcctcagttcatattt
gagtccgaaatagaatctgttcgtggagctgtttgtagtgttatttgtacacaaccaaga
agaatatctgcaatttctgtttctgagagagttgcttcagagagaggggagacattgggt
gaatctgttgggtataaagttcggctggagggcgtgaaagggaaggatacccatcttctc
ttctgcaccacaggcattttgttgagaagattactggttgatagaaatttgaaaggtgta
actcatgttattgttgatgagattcatgagcgtggaatgaatgaggattttctgcttatt
gtccttaaagatctcctccctcgccggcctgaattgaagctgattctgatgagtgcaaaa
ctagatgcagagctttttttgtcctactttggtggagctatgataattcacattccgggt
ttcacataccctgtcagaactcattttctggaaaatatattggaagtgacgggttacaga
ttgaccccatttaatcaaattgatgattatggcgaagaaaaaatgtggaaaatgagcaaa
caagcaccaagaaaaaggaagagccaaattgcatctttagttgaggatgcacttagagtg
gccaatttcaaggagtatagcccccagactaaggagtcattgtcatgttggaatcctgat
tgtattggttttaatctcattgaatacctcctatgtcatatttgtgagaaggaaagacct
ggtgctgttctagtctttatgactggttgggatgacataaattctcttaaggataaacta
caagctcatcctatattaggagattcaagccgagtattgttacttacctgccatggttct
atggctagttcagagcagagtttaatatttgacgagcctgaaggtggagtgaggaaaata
gtgcttactactaacatagctgagactagtatcaccattaatgatgttgtttttgtcatt
gactgtgggaaagcaaaggagacatcttatgatgcactgaataacacttcttgtctgctt
ccttcctggatttccaaggtttctgctcaacaaagaagaggaagggctggccgtgttcaa
ccaggagaatgttaccatctgtatcctaggtctgtgtatgatgcttttgcagaatatcag
cttcctgaaattttaaggacacctttgcagtctctatgcttgcaaattaaaagtttaaaa
cttgggagtatttctgagttcttatccagggctctgcagtcacctgagttgctagctgtc
caaaatgctattgaatatttaaaaatcactggggccttggaccagaatgaagacttgact
gtcttagggcggtacttgaccatgcttccaatggaacccaaacttggaaagatgctaata
ttaggtgccatcttcaaatgtctggaaccagtattaacaattgttgctggccttaatgtc
agagatcctttcttagcaccagtggacaaaaaggatcttgctgaggctgcaaagtctcag
ttttcctgtgatcatagtgaccatcttgcacttgtacgggcttacgagggatggaaagat
gctgaaagagaccttgctggatacgaatactgttggaaaaactttctctcatttcaatca
atgaaagctatcgattctcttcgggatgagttcttctctttgctcagggatactggtctt
gttgattgcaacacaaccatttgcaatgcatggagctatgatgatcatcttgttcgagca
gttatttgttatggtctttaccctggaatttgctccgttgtgaacaatgtgaagtccttt
tcactgaaaactatggaagacggccatgtgcttctatactctaattctatcaatgctcgg
caacctgaaattccatacccatggctggttttcaatgagaagataaaagtgaactctatt
tttctaagggattcaacagctatctgtgattcagtgttgctcctgtttggtggtagcatc
tctcaaggaaacactgatgggggacacttgaaaatgatgggaggatatttagaattcttc
atggaacctgcactttctgatatgtatcaatgtttaaggagagaacttgatgagctgatt
cagaataagttactcaatcccagaatggaaatgcacatgtatcgtgatctcctatctgca
gttcgattgcttgtttcagaagatcgttgcgagggaagatttgtatttggtcgccaggtg
cttaagtcgcttaagtcttcacctgtgccattacagccagctttgattccacggacagag
agcggacctgggggcgataatcctaagagtcagctccaaacattgctcaccagggcagga
tatgctgcccccagctacaaatcaagacaattgaagaacaaccagttcttggctacagtg
gagttcaatggaattcaaattatgggtcggccttgcaacaataagaagagcgcagagaag
gatgccgcagctgaggcactgcagtggctaatgggagggacccagacaagccttgaatgt
ataaatcaaatgtcactgttactgaagaaagcaagaaggatcacttctgaatcagcacca
ccctcaagttcatag
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