Mangifera indica (mango): 123215045
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Entry
123215045 CDS
T07684
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123215045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123215045
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123215045
Spliceosome [BR:
minc03041
]
Complex C
Other components
Step II factors
123215045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
nSTAND3
PhoH
ABC_tran
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
123215045
NCBI-ProteinID:
XP_044491022
LinkDB
All DBs
Position
4:19108126..19115507
Genome browser
AA seq
716 aa
AA seq
DB search
MPSMAQGGVSNSKSHKLDSKVLPNDSFTRRKKIMQQRKSLPIASVEKRLVEEVRKNDILI
IVGETGSGKTTQLPQFLFHGGFCNDGKVIGITQPRRVAAVTVAKRVAEECGVELGQRVGY
SIRFDDRTSGTTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV
QNVRSKSVDDNFNAENKNASNDSLLDKENGVQCNGSFKQCRGRKFPPLKLIIMSASLDAR
VFSEYFGGARAVHIQGRQFPVDILYTLYPEPDYMDAALITIFQIHLEEGPGDILVFLTGQ
EEIESVERLLQERLQQLPEASRKLITVPIFSSLPSEQQMRVFAPAAYGFRKVILATNIAE
TSVTIPGIKYVIDPGFVKARTYDPVKGMESLIIVPISKAQALQRSGRAGREGPGKCFRLY
PESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRASIVKSLEQLFLL
GALTDDCKLSDPVGHQMARLPLDPIYSKSLIVASQFNCLEEMLITVAMLSVESIFYAPRE
KLDEARTAMKCFASPDGDHLTLINVFRRSVDFLKNRKMEISKEKSEKLLRKWCKENFINS
RSLRHARDIHSQIRGHVEQMGLHISSCGDDILQFRRCLAASFFLNAALKQPEGTYRALAS
GQMVQIHPSSVLFRAKPECIIFNELVQTNHKYIRNITRIDYMWLTELAPQFYTMQN
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggctcaaggcggagtgagtaactccaaaagccataaacttgattccaaa
gtcttacccaatgactcctttaccaggaggaaaaaaattatgcaacagagaaagtcccta
ccaatagcttcagttgagaaacgtcttgtcgaggaggttcgtaaaaacgatattttgatt
atagttggtgagactggaagtgggaaaacaactcaattaccccagtttcttttccatggt
ggattttgtaatgatggtaaagttattggaataacgcaacctagacgtgttgcggcagtc
actgttgcaaagcgggttgctgaagaatgtggtgttgagttgggccaaagagttgggtat
tccattaggtttgatgataggacttctggcacaacaaggatcaagtacatgaccgatgga
ttgctactgagggaagcattactggatccttatctctccaggtattctgttatcattgtt
gatgaagctcatgagagaactgtccatactgatgtgttgctgggcttgctgaaaaaggtg
caaaatgtgaggtccaaatctgttgatgacaactttaatgctgagaataagaacgcaagc
aatgatagtctgttggacaaagaaaatggtgttcagtgcaacggtagttttaagcaatgc
cgaggaagaaaattccccccattgaagttaataatcatgtcagcaagcttggatgcacga
gttttctcagagtactttggtggtgcaagagctgttcatatccaaggacgacagtttcct
gttgatatactttatactctttatccagagcctgattatatggatgcagccttaattaca
attttccagattcatttggaggagggccctggtgatatacttgtctttttgaccggacaa
gaagagattgaatcagttgaaagacttttgcaggagcgacttcaacagttacctgaagcc
agtcgaaagttgataactgttcctatattctcatctcttccatcagaacagcaaatgcga
gtttttgcaccagctgcatatgggtttcgtaaggtgatactggcaacaaatattgctgaa
acatcggtgacaatacctggaatcaagtatgttattgatcctggatttgttaaagcacgt
acatatgatccggttaaagggatggaatcattaatcattgttcccatctcaaaggcacag
gctcttcaaagaagtggacgtgcaggtcgtgaggggccagggaaatgcttccgtctctac
ccagagagtgaatttgagaaacttgaggattcaacgaagccagaaatcaagcgctgtaat
ctatcaaatgttatcttgcagctcaaggccttgggtgttgatgatatcattgggtttgac
tttttggaaaaaccttcaagggcatccatcgtcaaatcattggagcagctgttcttgctt
ggtgctttaacagatgactgtaagctgtctgatccagttggacatcaaatggctcggctc
cccttggaccccatttattccaaatctctcattgtagcaagtcagttcaactgtttggaa
gaaatgctgataactgttgcaatgctctcagtggaatccatcttctatgcccctcgggaa
aagttagacgaggcaagaactgcaatgaaatgttttgctagtccagatggagatcacctc
actttgatcaatgtatttagaagatctgtggatttcttaaagaatagaaagatggaaatt
agtaaagaaaaaagtgaaaaacttttgagaaaatggtgcaaggaaaattttattaacagc
cgttctctcagacatgctcgtgacatccatagtcaaattcgagggcacgttgaacaaatg
ggtcttcatatttcttcttgtggagatgacatacttcaattccgtaggtgccttgctgcc
tcctttttccttaatgctgctttgaagcagcctgagggaacatacagggctttggcaagt
ggtcagatggtgcagatccatccttcatctgtcttatttcgggcaaaaccagagtgcata
attttcaatgaactggtccaaactaatcataagtacatccgcaatataactagaattgat
tatatgtggttgactgagttggctcctcaattttataccatgcagaattaa
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