Mangifera indica (mango): 123215366
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Entry
123215366 CDS
T07684
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
minc03036
]
123215366
Chromosome and associated proteins [BR:
minc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123215366
microRNA pathway
RISC loading complex
123215366
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
DEAD
Helicase_C
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
SWI2_SNF2
Piwi
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123215366
NCBI-ProteinID:
XP_044491357
LinkDB
All DBs
Position
5:18048211..18058756
Genome browser
AA seq
1983 aa
AA seq
DB search
MMEEETRVSVPVDGGEPNQSSYWLDACEDISCDLIDHFVDFDTSIPQDSVDNTSNQDGLT
NDFFGGIDHILDSIKNGGGLPTNDDRCLNNNGFQDSTIREGWSLNESSVDGKNQGEGLVL
QYNTVSDKDILERNGKMEDFDKGSNNLVNGKGENRLLDHCIQENGLHRNNVKNSGHEALK
GRDFDSEDRFSRRARVSCYRNERQYSNRGQYCSRDRERGSNRKRPRDWEDVDRRDRDHMR
RREHYNGTSRRDGRDRDWRDKESRGYWERDRSGSNEVVFRLGTWEADNSNKGGKEANGIN
QECNGKVEKKSDAKDKIPEEKVRKYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIC
NELQRQNKKMLAVFLVPKVPLVYQQAEVIRERTGYIVGHYCGEMGQDFWDAQRWQREFET
KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTAKEKRPS
VFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDK
AASLWSLHEQIKQMEMAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGA
ANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQ
CELLEGAVSDKDAEAANSDNGIVQDSTYVDEIEEGELPDSHVVSGGEHVDVVIGAAVADG
KVTPKVQSLIKILLRYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVRCASLIGHNN
SQEMRTCQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR
ARKPGSDYILMVERGNLSHAAFLRNARNSEETLRKEAIERTDLSHIKDTSRLISVDTVPG
TVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQL
PCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDE
GDPLPGTARHREFYPEGVADILQGEWILSGRDGCSDSKMFHLYMYAVKCVNSGISKDPFL
TQVSEFAVVFSNELDAEVLSMSMDLFIARAMITKASLVLRGSIDITETQLASLKKFHVRL
MSIVLDVDVEPSTTPWDPAKAYLFIPIVSDKSVDPLDEIDWDIIENIIRTDAWSNPLQRA
RPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQACHPTYGIRGAVAKYDVVQASGLVPYR
DTMQLQNVDIGKGKLIMAHSFTDAEDLVGRIVTAAHSGKRFYVESIRYDMTAESSFPRKE
GYLGPLEYSSYADYYKQKYGFELKFKQQPLIRGRGVSYCKNLLSPRFEHSEGQDGETEET
LDKTYYVFLPPELCFVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKEKINYPVPASKIL
EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQ
YALNKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDREKSVAEDKPSTGHHHD
DYEDEEMEDGEIEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKHAANHLMSWIGIQVES
DPEMIDCPIRPSYLPESILKSVDFEALEGALNIKFKDRSLLVEAITHASRPSSGVSCYQR
LEFVGDAVLDHLITRHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSS
ALERQIRDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIIESIAGAIFLDSGRNTAVVWK
VFRPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQ
NPQKKMAQKLAARNALAVLKQKETAEAKENGDENGKKKKNGNQTFTRQTLNDICLRRNWP
MPFYRCVSEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNK
WYS
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggaggaaactagggtttctgtgccggttgacggtggtgaacccaaccagtca
tcttactggttagatgcctgtgaggatatttcttgtgacttgattgaccattttgttgat
tttgatacttcaattcctcaagattcagtagacaatacttcaaatcaagacggacttact
aatgatttttttggaggaattgaccacattcttgatagtattaagaatggtggtggcctg
cctacaaacgatgatcgttgcttaaacaacaatggatttcaagattctaccattcgcgag
ggttggtctctaaatgagtcatccgtggatggcaagaaccaaggcgagggcttggtttta
cagtataatactgttagtgataaagatattcttgaaagaaatggcaagatggaggatttt
gataaggggagcaataacttagttaacggtaaaggagagaataggttgttggatcattgt
atccaggagaatggattgcatagaaataatgtaaagaacagtggtcatgaggcattgaag
ggtcgtgattttgatagtgaagataggttcagtagaagggctcgagttagctgttacagg
aatgagaggcagtattctaacagagggcaatactgttctagggatagggagaggggctct
aataggaagaggccacgtgattgggaagatgttgatagaagagacagggatcatatgagg
agaagagaacattataatggaactagccggagagatggaagagatagggattggagggat
aaagaatcaaggggttattgggagagggataggtcggggtccaatgaagtggttttccga
ctaggcacttgggaagctgataacagtaacaaaggagggaaggaagctaatgggataaac
caggaatgcaatgggaaggtggagaagaaatctgatgctaaggataaaattccagaggag
aaagttcgcaaatatcagttggatgttcttgaacaggctaagaagaaaaatacaatagct
tttcttgagacaggagcaggcaagactctcattgcagttcttcttattaaaagtatttgc
aatgagttgcaaaggcaaaataagaaaatgcttgctgtatttttggtccctaaagttcca
cttgtatatcagcaagctgaagttattcgagagcgaactggttatatagtgggccattat
tgtggtgaaatgggccaagatttctgggatgctcaaaggtggcagcgtgagtttgaaaca
aagcaggttttagtcatgactgctcaaattctgttgaacattttgagacacagtataatt
aaaatggaagcaattaatcttctcattttggacgagtgtcatcatgctgtgaagaaacac
ccatattctttggtgatgtctgaattctatcatacaacggctaaggaaaaaagaccatct
gtttttggaatgactgcttctcctgttaacttgaagggtgtttcaagtcaagtggactgt
gcaataaagattcgtaatcttgaaagtaaactagattctgtagtttgtacaataaaagac
cgtaaagaactggaaaaacatgtgccaatgccctcagaagttgtggttgagtatgataaa
gcagccagcttatggtcccttcatgaacaaataaaacaaatggaaatggctgttgaagaa
gctgcacaatcaagctctagaagaagtaagtggcaattcatgggagctagagatgctggg
gccaaggaagagctgcgccaggtttatggtgtgtctgaaagaacagaaagtgatggggct
gctaatttaatacaaaagttgagagctataaattatgctcttggtgaacttggtcagtgg
tgtgcttacaaggtagcacaatcttttttgactgctttacagaatgatgagagggcaaac
taccaacttgatgtcaaatttcaagaatcctacctgagcaaagttgtgtctcttctgcaa
tgtgaattactagagggtgctgtttctgataaggatgcagaagctgcgaactcggataat
ggcattgttcaagatagcacctatgttgatgagattgaggagggagagcttcctgacagc
catgttgtctctggcggagagcatgtggatgtggtaataggagctgctgtagctgatgga
aaggtgaccccgaaggtacagtcactgatcaaaatacttttgaggtatcagcacacagag
gattttcgtgcaatcatctttgttgagagggttgtggctgctttagttcttcccaaggtt
tttgcagagcttccatctctgagttttgttaggtgtgcaagcttgattgggcacaacaat
agtcaggaaatgcggacatgccaaatgcaggacactatagcaaaattccgtgatggccgt
gtgacattgttagttgccaccagtgtcgctgaggaaggacttgatattaggcaatgcaat
gttgttattcgttttgaccttgcaaaaactgtattggcatacattcaatcgaggggtcgt
gcaagaaagcctggttcagattatatcttgatggtggagaggggaaatctgtcgcatgct
gcattcttacggaatgctaggaatagtgaggaaaccttgagaaaagaagcaattgagaga
actgatcttagtcacattaaggatacttctaggttaatttctgtggacacagtaccgggt
acagtataccaggtggagtcaactggggctgttgtgagcttaaattctgctgttgggctc
atccatttttactgctctcagctgcctagtgacaggtattcaatacttcgtcctgaattt
attatggagaaacatgagaagccaggaggtccaactgaatattcttgcaagctgcaactc
ccttgtaacgcaccgtttgaaaagcttgagggtccagtttgcagctcaatgcgcctggcc
caacaggctgtttgtttagctgcttgcaagaaactccatgagatgggagcatttactgac
atgctcttgccagacaagggaagtggggaacaacaagaaaaagttgatcagaacgatgaa
ggagatccacttcctgggactgctaggcatagagagttctatcctgaaggggtagctgat
atactccagggagaatggattttatctggaagagatggttgcagtgactccaaaatgttt
catttgtatatgtatgcggtcaaatgtgtgaacagtggcatttcaaaagatcctttctta
actcaggtttcagaatttgcggtagtattcagcaatgagctggatgcagaggtgttatcg
atgtcgatggatctatttatcgcccgtgccatgatcacgaaggcatcacttgtcttaagg
ggttcaatagatattactgaaactcagctggcatcccttaaaaaatttcatgtaagattg
atgagcattgtattggatgtggatgttgaaccttccaccactccgtgggatcccgcaaag
gcatacttgttcatccccattgttagcgataagtctgtagatcctttagatgagattgac
tgggatattatcgaaaatataattagaacagatgcatggagcaatccccttcagagagct
cgacctgatgtttatcttggcacgaatgagagaacactaggtggagatagaagggagtat
ggatttggtaagctgcgtcatggtatggcttttggacaggcgtgccatcctacttatggt
attagaggagctgtagcaaagtatgatgttgtgcaagcttctgggttggttccttatcga
gatacaatgcaactgcaaaatgtggatatcggcaaaggaaagttgatcatggctcattcc
ttcactgatgcagaagatctggtggggagaattgtaacggctgctcactcggggaaaagg
ttttatgtggagtcaatccgctatgacatgactgcagagagctcattcccgaggaaagag
ggctatcttggtcctctggagtacagttcatatgctgactactacaagcaaaagtatggt
tttgagttaaaatttaagcaacaacctttgataagaggacgtggtgtttcatactgcaag
aatctcctatcccctcgctttgaacactcagaaggacaagatggtgaaacagaagagact
ctagataaaacatattatgtttttctacctcctgagctctgtttcgttcatccacttcct
ggatcacttgttcgaggggcccagaggttgccttcaataatgaggagggtagagagtatg
cttcttgcagttcaactgaaggagaaaataaattatccagttccggcttcaaagatcttg
gaagccttgactgcagcctcatgccaggagactttctgttatgaaagagctgagcttctg
ggggatgcttatctgaaatgggtggttagccgatttctgtttcttaaatatccccagaag
catgagggtcagctcactagaatgagacaacagatggtgagtaacttggttctttatcag
tatgcactgaataaaggactccagtcatatatccaagcagatcggtttgcaccttccaga
tgggccgcacccggagtgctgcctgtctttgatgaagatacaaaggatggagactcttcc
ttatttgatcgtgaaaaatcagttgctgaggataaaccaagtactggccatcatcatgat
gattatgaagatgaagaaatggaagatggagagattgagggtgactcaagttcttatagg
gtcctctcaagcaaaacattagcagatgttgttgaagctttgattggagtttattatgtt
gaaggtgggaagcatgcagctaaccaccttatgtcatggatcgggattcaggtagaatct
gatcctgaaatgattgactgcccgataaggccatcctaccttccggagagcatacttaag
agtgttgactttgaggccttagaaggtgctttgaacatcaagtttaaagatcggagcctc
ttggtggaggctattactcatgcctcccggccatcttctggagtatcatgttaccagcga
ttggagtttgttggtgatgctgtcttagatcatctgattactcggcacttgtttttctca
tacacgaatctacccccaggtcgcttgactgacttacgagctgcagctgtaaacaatgaa
aactttgctcgtgttgcagttaagcataagctccatgtacaccttcggcatgggtctagt
gcccttgaaagacagattcgagactttgtgaaggaagttcaagatgaattatcaaaacca
gggttcaattcctttggtctaggagattgcaaagctcctaaagttctcggtgacattata
gaatctatcgctggtgccatttttcttgacagtggacgaaatactgcagttgtgtggaag
gttttccggccattgttgcatcccatggtcactccagagacacttccaatgcatcctgtg
agggagctgcaagagcgttgtcagcaacaagccgaaggcttggaatacaaagccactcgt
agtggcaatttggctactgtggaagtctttattgatggagtacaggttggagttgctcag
aatcctcaaaaaaaaatggcacagaaactagctgccaggaatgcacttgctgttttgaaa
cagaaggaaacagctgaagcaaaggagaatggtgatgagaatgggaagaagaagaaaaat
ggcaaccaaacattcaccaggcaaacgttgaatgatatctgcttgcggagaaattggccc
atgcccttctataggtgtgttagtgaaggtgggccagcacatgcaaagagatttactttt
gcggttcgtgttaatacaacggatagaggatggacggatgaatgtgtcggagagccgatg
ccaagtgtgaaaaaggccaaggactctgccgctgttttgcttttggaacttctcaacaaa
tggtattcatga
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