Mangifera indica (mango): 123215434
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Entry
123215434 CDS
T07684
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123215434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123215434
03009 Ribosome biogenesis [BR:
minc03009
]
123215434
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123215434
Spliceosome [BR:
minc03041
]
Complex A
U2 snRNP components
U2 related factors
123215434
Complex B
123215434
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123215434
Ribosome biogenesis [BR:
minc03009
]
Eukaryotic type
90S particles
Helicases
123215434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
AAA_30
SRP54
ResIII
AAA_7
ABC_tran
PhoH
Flavi_DEAD
T2SSE
AAA_11
DUF815
FtsK_SpoIIIE
HTH_IclR
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
123215434
NCBI-ProteinID:
XP_044491454
LinkDB
All DBs
Position
5:17482430..17505629
Genome browser
AA seq
724 aa
AA seq
DB search
MGTERKGKVSLFDVVDETSVSGKLAKSNGSGATMNDNNSSINLWNGKPYSQRYYEILDKR
ATLPVWHQKEEFLHVLKANQVLILVGETGTGKTTQIPQFVLEAVDMETPDKRRKMMVACT
QPRRVAAMSVSRRVAEEMDVAIGEEIGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKISKE
IANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTID
GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRTGRAGRTQPGKCFRLYTEKSFS
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDD
DGNLTELGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAFKQNNEDPSWCYENFINHRALKAADNVRQQLVRIMARF
NLKLCSTDFNSRDYYVNIRKAMLSGYFMQVAHLERRGHYLTVKDNQLVHLHPSNCLDHKP
EWVIYNEHVLTSRSFIRTVTDVRGEWLIDVAPHYYDLTNFPQCEAKRVLERLYRKREKER
ENRK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaaggggaaggtgagcttgtttgatgtggtagacgagacatcggtc
tcaggcaagttagccaaatcaaacggttctggagcgacgatgaacgacaacaatagttct
attaatttatggaacgggaagccttactcacagaggtattatgagatactggataagcgt
gcaactttgcctgtctggcatcagaaggaggaatttttacatgtcttgaaagccaatcaa
gttctgatattggtcggtgagactggtactgggaaaactactcagattcctcagtttgta
ttggaagctgttgatatggaaacccctgataagcgtaggaagatgatggttgcatgcacc
caacctcgtagagtggctgcaatgtctgtttctcggcgtgttgcagaagaaatggatgta
gctattggagaggagattggttatagcatccgttttgaagattgcagtagtgcaagaaca
gttttgaagtatctaacagatggtatgcttttgagagaggcaatgactgatccactttta
gaacgatacaaagtaattatccttgatgaggctcatgaaaggacgttggccaccgatgtg
ctgtttggtcttttgaaagaagtattgaaaaatagacctgatctgaaactagttgtcatg
agtgcaactctagaggctgaaaagttccagggttattttaatggtgcaccactcatgaag
gttcctggtaggcttcatccagtggaaattttctatactcaggaacctgagagggattat
ctggaggcagctattcgaactgttgttcagatacacatgtgtgaacctccaggggacata
cttgtttttctaactggagaggaagaaattgaagatgcatgccgcaaaatatctaaggag
attgctaatttgggtgaccaagtgggccctgttaaggcagtgcctctgtattctactctt
cctccggctatgcagcagaaaatatttgagcctgctccacctccactcaaagaagggggc
cctcctggaaggaagattgtagtctctaccaacatcgcagaaacttctttgaccatagac
ggaatagtatatgttattgatcctgggttcgctaaacaaaaggtttataatccacgagtg
cgtgtggagtccttattggtatctccaatatcaaaagcaagtgcacatcagcgaactggg
cgtgctggaagaactcagccgggtaaatgttttcgtctatacactgaaaaaagtttcagt
aatgatcttcagccacagacctatccagaaatattgcgatcaaaccttgcaaatacagtg
cttaccttgaagaaactaggcatagatgacctggtgcattttgattttatggacccccct
gctcctgagacactgatgcgggcattagaagtgttaaattacttggcagcacttgatgat
gatggaaacttaacagagctgggggaaaagatgagtgaatttccattagatccacagatg
tcaaagatgcttgttgagagtcccaaatacaactgctcgaatgaaattctatcaatttct
gccatgctttcagtacccaattgctttgtccggcctagggaggctcagaaagctgctgat
gaagcaaaagctaggtttgggcacattgatggggatcatctgacgctcttaaacgtatat
catgctttcaagcaaaacaatgaggatccgtcttggtgctatgaaaattttatcaatcac
agggcactgaaggctgctgataatgttagacaacagctggttcgcatcatggcaaggttc
aacctcaagctatgcagcactgattttaacagtcgggactactatgtcaacatcagaaag
gctatgctatctggatattttatgcaagtagctcacttggaacgcagaggacactatttg
acagttaaagataaccaattggtacatttacatccatcaaattgcttggatcacaagccg
gagtgggtcatctataatgaacatgttcttaccagtcggagttttatccgtacagttaca
gatgttagaggtgaatggctaattgatgtagcaccacactactatgatcttacaaacttt
ccccagtgtgaagccaaacgtgttcttgagaggctttacaggaagcgggagaaggagagg
gagaaccgaaaatga
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