Mangifera indica (mango): 123215564
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Entry
123215564 CDS
T07684
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
minc
Mangifera indica (mango)
Pathway
minc03430
Mismatch repair
minc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123215564
03460 Fanconi anemia pathway
123215564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
minc03400
]
123215564
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
123215564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
DUF3533
Motif
Other DBs
NCBI-GeneID:
123215564
NCBI-ProteinID:
XP_044491650
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Position
5:16823899..16832404
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AA seq
925 aa
AA seq
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MESETLTISPIIRPINKGVVHRICAGQVILDLSSAVKELVENSLDAGATSIEIALKEHGA
ESFQVIDNGCGISPNNFKVLALKHHTSKLADFPDLQSLSTFGFRGEALSSLCALGNLTVE
TRTKNESVATHLTFDHSGLLTAEKKTARQIGTTVTIQKLFSNLPVRSKEFSRNIRKEYGK
LISLLNMVEYSSLLFIFNYQAYALIAKGVRLVCTNTTGRNVKSVVLKTQGTGSLRDNIIT
VFGMNTFSCLEPVTICVSDCCKVEGFLSKPGQGNGRNLGDRQYFFVNGRPVDLPKVSKLV
NELYKGANSRQYPIAIMNFIVPTRACDVNVTPDKRKIFLSDECTILHVLREGLQQIYSQG
NTSYSVNKVEEHSRQADSSKFCFTHEKSTVMVEQLSAVGITSKEVQEKQTSGSIAPLKIK
IDTQHSHGIEGSVHCTNENLILKDFTLRAHDNKKGDIFPKYSPSSSKVIEKIVAENRESN
SHSSSIQSSISKFVTVSKRKYESIGTTLSEVPVLRNQSLQCQLKTSSAAATMSPVKYNLG
GDSAEVNKDEPFKCLRTDKVFKEIENPLSSEASADGRPGEDLGTQQEVMPLVISPSITSS
SKSLQKNSCLPAVASSLKCSGSQLDAPLTSSGLVICSTLQFSFEELRSRRQQRLFRTHSS
SFMSGSVKMRRCYAAATLELSQPENEERKAGALAAATTELERLFRKDDFGRMKVIGQFNL
GFIIGKLDSDLFIVDQLLLYSQHAADEKYNFERLSESTTLNQQPLLRPLRLELTPEEEIV
ASMHMDIIRKNGFALEEDPLALTGQRFKLKAVPFSKNITFGVEDVKDLISSLADSEGECS
IISSYKMDTADSVCPSRVRAMLASRACKSSVRIGDALGRNEMQKILEHLTDLKSPWNCPH
GRPTMRHLVDLTTIRKTYNEDDADC
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagaaaccttaactatatcaccgatcatcagacccataaataaaggtgtggtt
catagaatctgcgccggccaagtcattttggacctatcatccgccgttaaggagctcgtt
gaaaacagcttagacgccggtgcaaccagcatcgaaatagcattgaaagagcacggcgct
gagtctttccaggttatcgacaatggctgtggcatttcacccaataatttcaaggttcta
gcacttaagcaccatacttccaaattggcagattttccagatcttcagtctctgtcaacg
tttggttttagaggggaggcattgagttcactttgtgcattagggaatttgactgttgaa
acaaggacgaaaaatgagtcagttgcaacgcacttgacttttgaccattcaggtctacta
acagctgagaagaaaactgcacgtcaaattggtaccactgtcaccattcagaaattattc
tcaaatttacccgttcgaagcaaagaatttagtcgcaacatacgcaaggaatatggaaag
ctaatttctttgttaaatatggtagaatattcttcactgctttttatttttaattatcag
gcctacgcgcttattgcgaaaggagttcgattggtctgcaccaacaccactggaagaaat
gtgaaatctgtggtacttaaaacacaagggactggttcccttagagataacatcataaca
gtgtttggaatgaacactttcagctgcttagagcctgtgactatatgtgtatcagactgt
tgcaaggttgaaggtttcctttccaagcctggacagggcaatggacgcaatttgggagac
aggcaatatttttttgtgaatggacgacctgtagatctgcctaaagtcagcaaactagtt
aatgagttatataaaggtgcaaactcacgacaatatcccattgcgattatgaattttatt
gtccctactagagcatgtgatgtcaatgtgactcctgacaaaagaaaaatattcctttct
gatgaatgcactatattacatgttctaagagagggtttacagcagatctattcccaaggc
aataccagttattctgttaataaagtcgaagagcattcaaggcaagcagatagctctaag
ttttgttttacacatgagaaatctactgtgatggtagaacagttatctgcagttggaatt
acgtccaaagaagttcaggagaagcaaacttcagggagcattgctccattgaaaatcaaa
attgatactcagcactcacatggcatagaaggatcagtccattgtaccaatgaaaactta
attttgaaggacttcaccctcagagcacatgacaataagaagggtgacatttttccgaaa
tattctccatcctcttccaaagtgattgagaaaatagttgctgaaaatagagagtcaaat
agtcattcaagcagtattcagtcatcaattagcaaatttgtaactgtgagtaagaggaag
tatgaatctattggtacaacattatctgaagtgcctgttttaagaaatcagagccttcaa
tgtcaattgaagaccagttctgctgcggctacaatgtccccagttaagtataacttgggt
ggtgattctgctgaggttaacaaggatgagccatttaagtgccttagaacagacaaggtt
tttaaggaaattgaaaatcctctttcttctgaagccagtgctgatggaagacctggagag
gacttaggcactcaacaagaagtcatgcctcttgttatttcaccatcaattacttcatct
agcaagagtctccaaaaaaattcatgtcttccagctgtggcatcttctttaaagtgttct
ggatcgcagctggatgctccactgacttcttctggactagtgatatgttctaccttgcaa
tttagttttgaagaattaaggagtaggaggcagcaaaggctgtttagaacacattctagc
agtttcatgtctggaagtgtaaagatgagaaggtgctatgctgctgcaacactagagctg
tctcaaccagaaaacgaggagcgtaaagcaggggctttagcggcagcaactactgaactg
gaaagactctttagaaaagatgactttggtagaatgaaggtgattgggcaattcaatctt
ggatttatcattgggaagctagacagtgatttatttattgtggatcagcttttactttat
tctcagcatgctgctgatgagaaatacaattttgagcgtttgtcagaatcaaccaccttg
aatcagcagcctttgcttcggccattgaggttggagttaactcctgaagaagaaattgtt
gcttcaatgcatatggacataataaggaaaaatggatttgctttggaggaggatccacta
gctctgacagggcaacgttttaaacttaaagctgttcccttcagtaaaaacataactttt
ggagttgaagatgtgaaggacctgatttcttctcttgctgatagtgaaggggaatgctca
attatcagttcttacaaaatggacactgcagattctgtttgcccatctagagttcgtgca
atgctggcttcccgtgcatgcaaatcatctgttaggattggagatgctctaggaagaaat
gagatgcagaagatccttgagcatctgacagacctgaagtctccttggaattgcccacat
ggtcgtccaaccatgcgtcatttggttgatttgacaaccatccgcaaaacttacaatgaa
gatgatgcagattgctga
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